Factsheet for TraesCS3B01G238600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G209100.1	Wheat	plastid	99.49	99.49
TraesCS3A01G206600.1	Wheat	plastid	99.32	99.32
HORVU3Hr1G049610.1	Barley	plastid	98.21	98.21
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	25.77	92.64
EES00939	Sorghum	plastid	90.19	90.26
Zm00001d044250_P001	Maize	plastid	89.68	89.98
Zm00001d011192_P001	Maize	plastid	89.85	89.69
GSMUA_Achr3P25910_001	Banana	cytosol	66.72	85.65
VIT_06s0004g03360.t01	Wine grape	plastid	77.65	76.6
CDX99865	Canola	plastid	74.74	75.98
Solyc06g075340.2.1	Tomato	plastid	77.3	75.82
KRH10406	Soybean	nucleus	74.83	75.54
KRH22939	Soybean	nucleus	74.91	75.3
PGSC0003DMT400019412	Potato	plastid	76.96	75.23
CDY26307	Canola	plastid	75.17	74.92
KRG91337	Soybean	cytosol	52.3	74.85
Bra032344.1-P	Field mustard	plastid	75.09	74.83
AT1G29900.1	Thale cress	plastid	75.17	74.22

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	Gene3D:3.40.50.20
MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	InterPro:ATP-grasp	InterPro:CarbamoylP_synth_lsu	InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf
InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0046872	InterPro:IPR011761	InterPro:IPR036897
InterPro:IPR036914	HAMAP:MF_01210_A	HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB
PFAM:PF02142	PFAM:PF02786	PFAM:PF02787	PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867
PFscan:PS50975	PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096
SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440	SUPFAM:SSF56059	TIGRFAMs:TIGR01369	EnsemblPlantsGene:TraesCS3B01G238600
EnsemblPlants:TraesCS3B01G238600.1	TIGR:cd01424	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:373873660..373878257

Molecular Weight (calculated)

127573.0 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.114

Length

1172 amino acids

Sequence
(BLAST)

0001: MATSLSSHSQ LRACPSHAHR ATVLSRSLLP FPRRHHGSSR RGLSARSASS NGAAQDTAVT VRHFAAEPTK GGKLSGVKKI MILGAGPIVI GQACEFDYSG
0101: TQACKALVEE GYEVVLVNSN PATIMTDPDL AHRTYIGPMT PPLVEGIIAS ERPDALLPTM GGQTALNLAV SLAESGALDR LGVRLIGASL PAIRAAEDRQ
0201: LFKQAMDRIG LKTPPSGIGT TLEECLAIAK DIGEFPLIVR PAFTLGGTGG GIAYNRAEFE DICRSGLAAS HTQQVLVEKS LLGWKEYELE VMRDMADNVV
0301: IICSIENIDP MGVHTGDSIT VAPAQTLTDK EYQRLRDHSV AIIREIGVEC GGSNVQFAVN PTDGEVMVIE MNPRVSRSSA LASKATGFPI AKMAAKLSVG
0401: YTLDQIPNDI TKKTPASFEP SIDYVVTKIP RFAFEKFPGS EPILTTQMKS VGESMALGRT FQESFQKAVR SLETGFAGWG CAPIKELDWD WEKIKYSLRV
0501: PNPDRIHAVY AAFKKGMRVE DIHEISFIDK WFLTELKELV DVEQFLVSKN LDQLSKDDFY QVKRRGFSDK QIAFATSSSE SDVRARRSAL GVTPTYKRVD
0601: TCAAEFEANT PYMYSSYEYE CESAPTNRKK VLILGGGPNR IGQGIEFDYC CCHASFALRE AGYETIMMNS NPETVSTDYD TSDRLYFEPL TVEDVTNVID
0701: LERPDGIIVQ YGGQTPLKLA LPIQRHLEEK KLRSASGTGF VKIWGTSPDS IDAAEDRKRF NAILEELGIE QPKGGIARSE SDALSIASEV GYPVVVRPSY
0801: VLGGRAMEIV YNDEKLIKYL ATAVQVDPER PVLVDKYLND AIEIDIDALA DSVGNVVIGG IMEHIEQAGI HSGDSACSLP TRTVSTKCLD IIRSWTTKLA
0901: KRLNVCGLMN CQYAITPTGE VYLLEANPRA SRTVPFVSKA IGHPLAKYAS LIMSGVTLPE LGFTKEVIPK HVSVKEAVLP FEKFQGCDIL LGPEMRSTGE
1001: VMGIDYEFSG AFAKAQIAAG QILPISGTVF VSLNDLTKRH LAEIGRGFRE LGFNIIATSG TAKVLQLEGI PVEPVLKIHE GRPNARDMLK NGQIQVMVIT
1101: SSGDDLDSRD GLQLRRLALA YKVPIITTVD GARATMDAIK SMKNKSIEIL ALQDYFQPAD APQKLPAAQA AP

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.