Factsheet for Zm00001d011192_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00939	Sorghum	plastid	96.34	96.58
Zm00001d044250_P001	Maize	plastid	94.55	95.03
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	25.55	92.02
TraesCS3D01G209100.1	Wheat	plastid	89.86	90.02
TraesCS3B01G238600.1	Wheat	plastid	89.69	89.85
TraesCS3A01G206600.1	Wheat	plastid	89.69	89.85
HORVU3Hr1G049610.1	Barley	plastid	89.44	89.59
GSMUA_Achr3P25910_001	Banana	cytosol	66.35	85.32
CDX99865	Canola	plastid	75.21	76.58
KRH10406	Soybean	nucleus	75.47	76.31
VIT_06s0004g03360.t01	Wine grape	plastid	77.17	76.26
KRG91337	Soybean	cytosol	53.15	76.19
KRH22939	Soybean	nucleus	75.3	75.81
Solyc06g075340.2.1	Tomato	plastid	77.09	75.73
PGSC0003DMT400019412	Potato	plastid	77.17	75.56
CDY26307	Canola	plastid	75.55	75.43
Bra032344.1-P	Field mustard	plastid	75.55	75.43
AT1G29900.1	Thale cress	plastid	75.64	74.81

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	EntrezGene:103636016	Gene3D:3.30.470.20	Gene3D:3.40.50.1380
Gene3D:3.40.50.20	MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	ProteinID:AQK96124.1	InterPro:ATP-grasp	InterPro:CarbamoylP_synth_lsu
InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0046872
InterPro:IPR011761	InterPro:IPR036897	InterPro:IPR036914	UniProt:K7V2Z8	HAMAP:MF_01210_A	HAMAP:MF_01210_B
InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB	PFAM:PF02142	PFAM:PF02786	PFAM:PF02787
PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867	PFscan:PS50975	PANTHER:PTHR11405	PANTHER:PTHR11405:SF47
InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096	SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440
SUPFAM:SSF56059	TIGRFAMs:TIGR01369	UniParc:UPI000221FE80	EnsemblPlantsGene:Zm00001d011192	EnsemblPlants:Zm00001d011192_P001	EnsemblPlants:Zm00001d011192_T001
SEG:seg	:	:	:	:	:

Description

Carbamoyl-phosphate synthase large chain chloroplastic

Coordinates

chr8:+:142592861..142598233

Molecular Weight (calculated)

127294.0 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.069

Length

1174 amino acids

Sequence
(BLAST)

0001: MATSLSTPSQ LRTSHCHARR YGRLLGLHPR VSCARCPAPR RAAALSVRAN AASTDGDAAV TVRRFPAAPT KAGRLAGVKK IMILGAGPIV IGQACEFDYS
0101: GTQACKALAE EGYEVVLVNS NPATIMTDPG LAHRTYIGPM TPPLVERIID AERPDALLPT MGGQTALNLA VSLADSGALD RLGVRLIGAS LPAIRAAEDR
0201: QLFKQAMDRI GLKTPPSGIG TTLEECLAIA EDIGELPLIV RPAFTLGGTG GGIAYNKAEF EDICRAGLAA SHTQQVLVEK SLLGWKEYEL EVMRDMADNV
0301: VIICSIENID PMGVHTGDSI TVAPAQTLTD KEYQRLRDYS VAIIREIGVE CGGSNVQFAV NPADGEVMVI EMNPRVSRSS ALASKATGFP IAKMAAKLSV
0401: GYTLDQIPND ITKKTPASFE PSIDYVVTKI PRFAFEKFPG SEPILTTQMK SVGEAMALGR TFQESFQKAV RSLETGFAGW GCGPIKELDW DWEKIKYSLR
0501: VPNPDRIHAI YAAFKKGMRV EDIHEISFID KWFLTELKGL VDVEQFLLSK SLDQLSKDDF YQVKKRGFSD KQIAFATSSS ESDVRSRRLT LGVTPTYKRV
0601: DTCAAEFEAN TPYMYSSYEY ECESSPTNRK KVLILGGGPN RIGQGIEFDY CCCHASFALR EAGYETIMMN SNPETVSTDY DTSDRLYFEP LTVEDVSNVL
0701: DLERPDGIIV QFGGQTPLKL ALPIQQYIEE NKMVSASGTG NVKIWGTSPD SIDASEDRKR FNAILEELQI EQPKGGIARS ESDALAIASE VGYPVVVRPS
0801: YVLGGRAMEI VYNDEKLIKY LATAVQVDPE RPVLVDKYLI DAVEIDVDAL ADTAGNVVIG GIMEHIEQAG IHSGDSACSL PTRTVSAQCL EVIRSWTTKL
0901: AKRLNVCGLM NCQYAISTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA SLIMSGVTLP ELGFTKEVIP KHVSVKEAVL PFEKFQGCDI LLGPEMRSTG
1001: EVMGIDYEFS GAFAKAQIAA GQKLPLSGTV FLSLNDLTKR HLAEIGSGFR ELGFSIIATS GTAKVLQLEG VPVEPVLKIH EGRPNARDML KNGQIQIMVI
1101: TSSGDALDSK DGLQLRRLAL AYKVPIITTV DGARASIDAI KSLKDKSIEI LALQDYFQTA DASADLQAAA QTTP

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.