CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032344.1-P	Field mustard	plastid	99.05	97.11
CDY26307	Canola	plastid	98.87	96.94
AT1G29900.1	Thale cress	plastid	93.41	90.73
GSMUA_Achr3P25910_001	Banana	cytosol	65.39	82.58
VIT_06s0004g03360.t01	Wine grape	plastid	82.74	80.3
Solyc06g075340.2.1	Tomato	plastid	81.09	78.24
PGSC0003DMT400019412	Potato	plastid	81.35	78.23
KRH22939	Soybean	nucleus	79.01	78.13
KRH10406	Soybean	nucleus	78.66	78.12
KRG91337	Soybean	cytosol	54.99	77.41
Zm00001d044250_P001	Maize	plastid	77.19	76.2
EES00939	Sorghum	plastid	76.76	75.58
Zm00001d011192_P001	Maize	plastid	76.58	75.21
HORVU3Hr1G049610.1	Barley	plastid	76.41	75.17
TraesCS3D01G209100.1	Wheat	plastid	76.06	74.83
TraesCS3A01G206600.1	Wheat	plastid	75.98	74.74
TraesCS3B01G238600.1	Wheat	plastid	75.98	74.74
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	20.38	72.09

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	Gene3D:3.40.50.20
MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	GO:A0A078ECP5	InterPro:ATP-grasp	EnsemblPlants:CDX99865	ProteinID:CDX99865
ProteinID:CDX99865.1	InterPro:CarbamoylP_synth_lsu	InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00108590001	InterPro:IPR011761	InterPro:IPR036897	InterPro:IPR036914
HAMAP:MF_01210_A	HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB	PFAM:PF02142
PFAM:PF02786	PFAM:PF02787	PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867	PFscan:PS50975
PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	MetaCyc:PWY-5154	MetaCyc:PWY-5686	MetaCyc:PWY-7400	InterPro:PreATP-grasp_dom_sf
SMART:SM00851	SMART:SM01096	SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440	SUPFAM:SSF56059
TIGRFAMs:TIGR01369	UniPathway:UPA00068	UniPathway:UPA00070	UniParc:UPI0004EEDD92	SEG:seg	:

Description

BnaC05g22870D

Coordinates

chrLK031914:+:668009..671769

Molecular Weight (calculated)

126423.0 Da

IEP (calculated)

5.271

GRAVY (calculated)

-0.114

Length

1153 amino acids

Sequence
(BLAST)

0001: MSSNHCLHLS HNHSSIFTSS KLSNPRLFSR AAINYRAKPR LSSNPDEKAK PFSPEIVGKR TDLKKIMILG AGPIVIGQAC EFDYSGTQAC KALREEGYEV
0101: ILINSNPATI MTDPETANRT YIAPMTPDLV EQVIAKERPD ALLPTMGGQT ALNLAVALAE SGALERYGVE LIGAKLEAIK KAEDRELFKE AMKSIGLKTP
0201: PSGIGNTLDE CFDIAERIGE FPLIIRPAFT LGGTGGGIAY NREEFESICK AGLAASVTSQ VLVEKSLLGW KEYELEVMRD LADNVVIICS IENIDPMGVH
0301: TGDSITVAPA QTLTDREYQR LRDYSIAIIR EIGVECGGSN VQFAVNPADG EVMIIEMNPR VSRSSALASK ATGFPIAKMA AKLSVGYTLD QIPNDITRKT
0401: PASFEPSIDY VVTKIPRFAF EKFPGSQPLL TTQMKSVGES MALGRTFQES FQKALRSLET GFSGWGCAKI KELNWDWDQL KYSLRVPNPD RIHAIYAAMK
0501: KGMKVDEIHE LSMVDKWFLT QLKELVDVEQ YLMSGPPLSE ITKEDLYEVK KRGFSDKQIA FATKATEEQV RSKRISLVVV PSYKRVDTCA AEFEAHTPYM
0601: YSSYDFECES APNTKKKVLI LGGGPNRIGQ GIEFDYCCCH TSFALQDAGY ETIMLNSNPE TVSTDYDTSD RLYFEPLTIE DVLNVIDLEK PDGIIVQFGG
0701: QTPLKLALPI KNYLDKHKPM SLSGEGPVRI WGTSPDSIDA AEDRERFNAI LNELKIEQPK GGIAKSESDA LAIAKEIGYP VVVRPSYVLG GRAMEIVYDD
0801: SKLITYLENA VEVDPERPVL VDRYLSDAIE IDVDTLTDSY GNVVIGGIME HIEQAGVHSG DSACMLPTQT IPSSCLETIR SWTTKLAKKL NVCGLMNCQY
0901: AITSSGDVFL LEANPRASRT VPFVSKAIGH PLAKYAALVM SGKSLKDLNF EEEVIPKHIS VKEAVFPFEK FQGCDVILGP EMRSTGEVMS ISSEFPSAFA
1001: MAQIAAGQKL PLTGTVFLSL NDMTKPHLEK IAVSFLDLGF KIVATSGTAH FLELKGIPVE RVLKLHEGRP HAADMVANGQ IHLMLITSSG DALDQKDGRQ
1101: LRQMALAYKV PVITTVAGAL ATAEGIKSLK SSAIKMTALQ DFFEVKNESS LLV

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.