CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011192_P001	Maize	plastid	96.58	96.34
Zm00001d044250_P001	Maize	plastid	95.13	95.38
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	25.88	92.94
TraesCS3D01G209100.1	Wheat	plastid	90.44	90.36
TraesCS3A01G206600.1	Wheat	plastid	90.35	90.27
TraesCS3B01G238600.1	Wheat	plastid	90.26	90.19
HORVU3Hr1G049610.1	Barley	plastid	90.09	90.02
GSMUA_Achr3P25910_001	Banana	cytosol	67.12	86.09
CDX99865	Canola	plastid	75.58	76.76
VIT_06s0004g03360.t01	Wine grape	plastid	77.63	76.52
KRH10406	Soybean	nucleus	75.49	76.14
Solyc06g075340.2.1	Tomato	plastid	77.2	75.65
CDY26307	Canola	plastid	75.92	75.6
Bra032344.1-P	Field mustard	plastid	75.92	75.6
KRH22939	Soybean	nucleus	75.15	75.47
KRG91337	Soybean	cytosol	52.69	75.34
PGSC0003DMT400019412	Potato	plastid	77.03	75.23
AT1G29900.1	Thale cress	plastid	75.75	74.73

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	Gene3D:3.40.50.20
MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	EntrezGene:8078204	InterPro:ATP-grasp	UniProt:C5XNR5	InterPro:CarbamoylP_synth_lsu
InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	EnsemblPlants:EES00939	ProteinID:EES00939
ProteinID:EES00939.1	GO:GO:0000050	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004087
GO:GO:0004088	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005951	GO:GO:0006526	GO:GO:0006807	GO:GO:0006950	GO:GO:0007154
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009605
GO:GO:0009987	GO:GO:0009991	GO:GO:0016020	GO:GO:0016036	GO:GO:0046872	InterPro:IPR011761
InterPro:IPR036897	InterPro:IPR036914	HAMAP:MF_01210_A	HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf
InterPro:MGS_CPS_CarB	PFAM:PF02142	PFAM:PF02786	PFAM:PF02787	PRINTS:PR00098	ScanProsite:PS00866
ScanProsite:PS00867	PFscan:PS50975	PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	MetaCyc:PWY-5154	MetaCyc:PWY-5686
MetaCyc:PWY-7400	MetaCyc:PWY-7790	MetaCyc:PWY-7791	InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096
EnsemblPlantsGene:SORBI_3003G193700	SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440	SUPFAM:SSF56059	unigene:Sbi.11481
TIGRFAMs:TIGR01369	UniParc:UPI0001A84884	RefSeq:XP_002455819.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:51631929..51636950

Molecular Weight (calculated)

127174.0 Da

IEP (calculated)

5.517

GRAVY (calculated)

-0.084

Length

1171 amino acids

Sequence
(BLAST)

0001: MATSLSTPSQ LRPSHSQARR HGRLLGPHPR VSCARCPAPR RAVALSVRAS TDGDAAVTVR RFPAAPTKAG RLAGVKKIMI LGAGPIVIGQ ACEFDYSGTQ
0101: ACKALAEEGY EVVLVNSNPA TIMTDPDLAH RTYIGPMTPP LVERIIDAER PDALLPTMGG QTALNLAVSL ADSGALDRLG VRLIGASLPA IRAAEDRQLF
0201: KQAMDRIGLK TPPSGIGTTL EECLAIAEDI GEFPLIVRPA FTLGGTGGGI AYNRAEFEDI CRAGLAASHT QQVLVEKSLL GWKEYELEVM RDMADNVVII
0301: CSIENIDPMG VHTGDSITVA PAQTLTDKEY QRLRDYSVAI IREIGVECGG SNVQFAVNPA DGEVMIIEMN PRVSRSSALA SKATGFPIAK MAAKLSVGYT
0401: LDQIPNDITK KTPASFEPSI DYVVTKIPRF AFEKFPGSEP VLTTQMKSVG EAMALGRTFQ ESFQKAVRSL ETGFAGWGCG PIKELDWDWE KIKYSLRVPN
0501: PDRIHAIYAA FKKGMRVQDI HEISFIDKWF LTELKELVDV EQFLVSRSLD QLSKDDFYQV KRKGFSDKQI AFATSSSESD VRSRRLALGI APTYKRVDTC
0601: AAEFEANTPY MYSSYEYECE SAPTNRKKVL ILGGGPNRIG QGIEFDYCCC HASFALREAG YETIMMNSNP ETVSTDYDTS DRLYFEPLTV EDVSNVLDLE
0701: RPDGIIVQFG GQTPLKLALP IQRYIEENKL VSASGTGNVK IWGTSPDSID AAEDRKRFNA ILEELGIEQP KGGIARSESD ALAIASEIGY PVVVRPSYVL
0801: GGRAMEIVYN DEKLIKYLAT AVQVDPERPV LVDKYLIDAV EIDVDALADT AGNVVIGGIM EHIEQAGIHS GDSACSLPTR TVSAQCLEVI RSWTTKLAKR
0901: LNVCGLMNCQ YAISTSGDVF LLEANPRASR TVPFVSKAIG HPLAKYASLV MSGVTLPELG FTKEVVPKHV SVKEAVLPFE KFQGCDILLG PEMRSTGEVM
1001: GIDYEFSGAF AKAQIAAGQR LPVSGTVFLS LNDLTKRHLA EIGRGFRELG FNIIATSGTA KVLQLEGVPV EPVLKIHEGR PNARDMLKNG QIQIMVITSS
1101: GDALDSKDGL QLRRLALAYK VPIITTVDGA RASIDAIKSL KNKSIETLAL QDYFQTADTS ADLQAAAQTT P

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.