Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019412 | Potato | plastid | 95.56 | 95.25 |
| GSMUA_Achr3P25910_001 | Banana | cytosol | 63.68 | 83.35 |
| VIT_06s0004g03360.t01 | Wine grape | plastid | 82.18 | 82.66 |
| CDX99865 | Canola | plastid | 78.24 | 81.09 |
| KRH10406 | Soybean | nucleus | 78.74 | 81.05 |
| KRH22939 | Soybean | nucleus | 78.74 | 80.7 |
| Bra032344.1-P | Field mustard | plastid | 78.66 | 79.93 |
| CDY26307 | Canola | plastid | 78.58 | 79.85 |
| KRG91337 | Soybean | cytosol | 54.56 | 79.61 |
| AT1G29900.1 | Thale cress | plastid | 78.91 | 79.44 |
| Os01t0570700-01 | Rice | cytosol, plasma membrane, plastid | 21.17 | 77.61 |
| HORVU3Hr1G049610.1 | Barley | plastid | 75.98 | 77.47 |
| TraesCS3D01G209100.1 | Wheat | plastid | 75.9 | 77.39 |
| Zm00001d044250_P001 | Maize | plastid | 75.56 | 77.31 |
| TraesCS3A01G206600.1 | Wheat | plastid | 75.82 | 77.3 |
| TraesCS3B01G238600.1 | Wheat | plastid | 75.82 | 77.3 |
| EES00939 | Sorghum | plastid | 75.65 | 77.2 |
| Zm00001d011192_P001 | Maize | plastid | 75.73 | 77.09 |
Protein Annotations
Description
No Description!
Coordinates
chr6:-:46765086..46770736
Molecular Weight (calculated)
131750.0 Da
IEP (calculated)
5.332
GRAVY (calculated)
-0.149
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDYCMNRCEN AAYRLISSSS SYVLPSSRIY SSRTQLFPWF PHSTYKKSSF LHLQSRPYVF SNTHLQKRVH SIVNEQINDD TVQKGFLGTD KLGKRTDIKK
0101: ILILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TADRTYIEPM TPDLVEQVLE NERPDALLPT MGGQTALNLA VALAESGVLD
0201: KYGVELIGAK LDAIKKAEDR DLFKQAMKNI GIKTPPSGIG NTLEECFEIA NNIGEFPLII RPAFTLGGTG GGIAYNREEF EAICKSGLAA SLTSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD KEYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMVI EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYSLDQIPND ITKKTPASFE PSIDYVVTKI PRFAFEKFPG SEAILTTQMK SVGESMAVGR TFQESFQKAV RSLECGYSGW
0501: GCAQVKEMNW DWDKLKYSLR VPNPERIHAI YAAMKRGMKV DDIHELSYID KWFLTQLREL VDVEQFLLAH SLSDLTKDDF YEVKKRGFSD RQIAFVTKSS
0601: EQEVRLRRLS LGVKPAYKRV DTCAAEFEAD TPYMYSSYDL ECESAPTQRK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMMN SNPETVSTDY
0701: DTSDRLYFEP LTVEDVINII DLEGPDGIIV QFGGQTPLKL ALPIQNYLDE RKPKSKSGAG FVSIWGTSPD NIDAAEDRER FNAILNELQI AQPKGGIAKS
0801: EKDALAIAAE VGYPVVVRPS YVLGGRAMEI VYNNEKLVRY LENAVKVDPE RPVLIDKYLT DAVEIDIDAL ADLYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTKTVSDSCL ETIRSWTTKL AKRLNVCGLM NCQYAITTTG EVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLY DLNFTKEVIP KHVSVKEAVL
1001: PFEKFQGCDV LLGPEMRSTG EVMGIHYESS IAYAKAQIAA GQKMPLSGTL FLSLNELTKP HLTTIARAFA ELGFQIIATS GTARVLELEG MPVEQVLKMH
1101: EGRPHAADLI ANGQIQLMVI TSSGDALDQI DGRKLRRMAL AYKIPVITTV AGALATADAI KSLKCNKIKM TALQDYFDDQ KVTAERKNLQ SASSS
0101: ILILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TADRTYIEPM TPDLVEQVLE NERPDALLPT MGGQTALNLA VALAESGVLD
0201: KYGVELIGAK LDAIKKAEDR DLFKQAMKNI GIKTPPSGIG NTLEECFEIA NNIGEFPLII RPAFTLGGTG GGIAYNREEF EAICKSGLAA SLTSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD KEYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMVI EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYSLDQIPND ITKKTPASFE PSIDYVVTKI PRFAFEKFPG SEAILTTQMK SVGESMAVGR TFQESFQKAV RSLECGYSGW
0501: GCAQVKEMNW DWDKLKYSLR VPNPERIHAI YAAMKRGMKV DDIHELSYID KWFLTQLREL VDVEQFLLAH SLSDLTKDDF YEVKKRGFSD RQIAFVTKSS
0601: EQEVRLRRLS LGVKPAYKRV DTCAAEFEAD TPYMYSSYDL ECESAPTQRK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMMN SNPETVSTDY
0701: DTSDRLYFEP LTVEDVINII DLEGPDGIIV QFGGQTPLKL ALPIQNYLDE RKPKSKSGAG FVSIWGTSPD NIDAAEDRER FNAILNELQI AQPKGGIAKS
0801: EKDALAIAAE VGYPVVVRPS YVLGGRAMEI VYNNEKLVRY LENAVKVDPE RPVLIDKYLT DAVEIDIDAL ADLYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTKTVSDSCL ETIRSWTTKL AKRLNVCGLM NCQYAITTTG EVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLY DLNFTKEVIP KHVSVKEAVL
1001: PFEKFQGCDV LLGPEMRSTG EVMGIHYESS IAYAKAQIAA GQKMPLSGTL FLSLNELTKP HLTTIARAFA ELGFQIIATS GTARVLELEG MPVEQVLKMH
1101: EGRPHAADLI ANGQIQLMVI TSSGDALDQI DGRKLRRMAL AYKIPVITTV AGALATADAI KSLKCNKIKM TALQDYFDDQ KVTAERKNLQ SASSS
0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV
Arabidopsis Description
CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.