Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G25060.1 | Thale cress | nucleus | 73.5 | 73.57 |
| KRH07572 | Soybean | nucleus | 63.04 | 68.31 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 66.53 | 65.35 |
| KRH45333 | Soybean | nucleus | 66.63 | 65.12 |
| Solyc03g025280.2.1 | Tomato | nucleus | 63.15 | 63.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.77 | 62.47 |
| EES04635 | Sorghum | nucleus | 61.03 | 61.16 |
| TraesCS1D01G190900.4 | Wheat | nucleus | 60.61 | 60.48 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 60.51 | 60.38 |
| TraesCS1B01G193700.1 | Wheat | nucleus | 60.51 | 60.38 |
| TraesCS6D01G137800.4 | Wheat | nucleus | 59.56 | 59.06 |
| TraesCS6A01G148500.2 | Wheat | nucleus | 59.35 | 58.85 |
| Os02t0179900-01 | Rice | mitochondrion | 14.68 | 57.92 |
| Zm00001d015499_P003 | Maize | nucleus | 56.92 | 56.62 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 59.24 | 55.82 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 59.56 | 55.79 |
| HORVU6Hr1G029290.9 | Barley | nucleus, plastid | 59.24 | 54.36 |
| PGSC0003DMT400082365 | Potato | cytosol | 6.02 | 44.53 |
| KRH07573 | Soybean | nucleus | 2.85 | 31.4 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:1.25.40.90 | MapMan:16.4.1.2.10 | Gene3D:3.30.70.330 | EntrezGene:830947 | UniProt:A0A178UHQ9 |
| ProteinID:AED91598.1 | ArrayExpress:AT5G10800 | EnsemblPlantsGene:AT5G10800 | RefSeq:AT5G10800 | TAIR:AT5G10800 | RefSeq:AT5G10800-TAIR-G |
| EnsemblPlants:AT5G10800.1 | TAIR:AT5G10800.1 | Unigene:At.32334 | ProteinID:CAB96835.1 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | UniProt:F4KIA8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR000504 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR012677 |
| InterPro:IPR035967 | RefSeq:NP_196641.2 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO93160.1 | PFAM:PF00076 | PFAM:PF01805 |
| PFAM:PF08312 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PFscan:PS50102 | PFscan:PS50128 | PFscan:PS51391 |
| PANTHER:PTHR23140 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00582 | SMART:SM00648 |
| SMART:SM01115 | InterPro:SR140_RRM | SUPFAM:SSF109905 | SUPFAM:SSF48464 | SUPFAM:SSF54928 | InterPro:SWAP/Surp_sf |
| InterPro:Surp | UniParc:UPI0000162488 | InterPro:mRNA_splic_Cwf21_dom | SEG:seg | : | : |
Description
Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
Coordinates
chr5:-:3412654..3418553
Molecular Weight (calculated)
109191.0 Da
IEP (calculated)
8.498
GRAVY (calculated)
-0.959
Length
947 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.