CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015499_P003	Maize	nucleus	84.02	83.4
TraesCS1B01G193700.1	Wheat	nucleus	83.07	82.72
TraesCS1D01G190900.4	Wheat	nucleus	82.96	82.61
TraesCS1A01G185900.1	Wheat	nucleus	82.86	82.51
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	86.88	81.69
TraesCS6D01G137800.4	Wheat	nucleus	81.69	80.84
TraesCS6A01G148500.2	Wheat	nucleus	81.59	80.73
TraesCS6B01G176700.1	Wheat	nucleus	82.22	76.85
HORVU6Hr1G029290.9	Barley	nucleus, plastid	81.48	74.61
GSMUA_AchrUn_...	Banana	nucleus	67.2	70.09
VIT_04s0008g06810.t01	Wine grape	nucleus	71.32	69.92
Os02t0179900-01	Rice	mitochondrion	17.67	69.58
KRH07572	Soybean	nucleus	63.28	68.42
KRH45333	Soybean	nucleus	69.74	68.01
Solyc03g025280.2.1	Tomato	nucleus	68.04	67.9
CDX87103	Canola	nucleus	64.97	65.6
Bra036530.1-P	Field mustard	nucleus	64.87	65.56
AT5G25060.1	Thale cress	nucleus	65.61	65.54
CDY19818	Canola	nucleus	64.66	65.35
KRH07573	Soybean	nucleus	5.93	65.12
AT5G10800.1	Thale cress	nucleus	61.16	61.03
CDX88153	Canola	nucleus	27.62	52.3
Bra009812.1-P	Field mustard	nucleus	25.71	51.7
Bra009813.1-P	Field mustard	nucleus	25.71	51.59
PGSC0003DMT400082365	Potato	cytosol	5.82	42.97
CDY28356	Canola	nucleus	10.48	41.95

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	UniProt:C5XWU9	InterPro:CID_dom
ncoils:Coil	EnsemblPlants:EES04635	ProteinID:EES04635	ProteinID:EES04635.2	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034	InterPro:IPR006569
InterPro:IPR008942	InterPro:IPR012677	InterPro:IPR035967	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OQU84491.1	PFAM:PF00076
PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800	PFscan:PS51391
PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360	SMART:SM00582
SMART:SM00648	SMART:SM01115	EnsemblPlantsGene:SORBI_3004G065100	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464
SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0007F1FAAB	InterPro:mRNA_splic_Cwf21_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:5247322..5257611

Molecular Weight (calculated)

106631.0 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.940

Length

945 amino acids

Sequence
(BLAST)

001: MSSKKVPYHK HREAEEARKK REEDEAARVY AEFVESFKGD SSSGAKFVRG GVIDPNAKLK IDSEGGKSKD GGSVPKKGSR YVPSFLPPSF AKEPEKKKEE
101: ERPKEKEKGK PRVIDKFLEE LKFEQEQRKK RNQDRDHRHE GRHSDSSMPS SRFDELPDEF DPTGRFPGSF DDGDPQTTNL YVGNLSPKVD ENFLLRTFGR
201: FGPIASVKIM WPRTEEERRR QRNCGFVAFM NRTDGQAAKD EMQGVVVYDY ELKIGWGKSV ALPSQALPAP PPGHMAIRNK EGGTVVLSGP GGPAVASVTP
301: QTSELVLTPN VPDIVVAPPD DGRLRHVIDT MALHVLDGGC AFEQAVMERG RGNPIFDFLF DLKSKEHTYY VWRLYSFAQG DTLQRWRTEP YIMITGSGRW
401: VPPPLSSNRS PEREKESTFA AGRSRRVEVE RTLTESQRDE FEDMLRALTL ERSQIKDAMG FALDNADAAG EIVEVLTESL TLKETSIPTK VARLMLVSDI
501: LHNSSAPVKN ASAFRTKFEA SLPDVMESFN DLYRSITGRI TAEALKERVM KVLQVWADWF LFSDAFLNGL RATFLRSGNS GVVPFHSLCG DAPEIEKKGS
601: SEDGNDGFKL NEDGALATGK AAATKELLGL PLAELERRCR HNGLSLCGGK EMMVARLLNL EEAEKERVYE KDVDMKYVQG EQHTIGSGVN TSKFGESPNV
701: DELDVSRNNM RAGKGRSGES AFAELESFPS KKPKYDPVLP ASKWSREDDI SDDEDRKGGR GLGLSYSSGS DIADDLGKVD TTEASTDHTS HHHDTIVDEE
801: HRQKLRQIEI SVMQYRESLE EQGLRNLDEI ERKVASHRRR LQSEYGLSTS ADGANRRSSE RTSSERKERR DDAHDYPRKR RRSQSRSRSP PRKSQERDRE
901: HNRSRDRSHG NDAGRDRVRE KSASRGRDDH YDRSRDREKD RRKGR

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.