CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009812.1-P	Field mustard	nucleus	73.15	77.66
Bra009813.1-P	Field mustard	nucleus	73.15	77.49
CDY28356	Canola	nucleus	21.04	44.49
CDY19818	Canola	nucleus	72.14	38.5
CDX87103	Canola	nucleus	71.94	38.35
AT5G25060.1	Thale cress	nucleus	72.14	38.05
KRH07573	Soybean	nucleus	5.61	32.56
KRH07572	Soybean	nucleus	52.3	29.86
KRH45333	Soybean	nucleus	57.92	29.82
VIT_04s0008g06810.t01	Wine grape	nucleus	57.31	29.67
Solyc03g025280.2.1	Tomato	nucleus	54.71	28.83
EES04635	Sorghum	nucleus	52.3	27.62
TraesCS1A01G185900.1	Wheat	nucleus	52.1	27.4
TraesCS1B01G193700.1	Wheat	nucleus	51.9	27.29
TraesCS1D01G190900.4	Wheat	nucleus	51.9	27.29
GSMUA_AchrUn_...	Banana	nucleus	49.1	27.04
TraesCS6D01G137800.4	Wheat	nucleus	50.7	26.49
TraesCS6A01G148500.2	Wheat	nucleus	50.5	26.39
TraesCS6B01G176700.1	Wheat	nucleus	50.5	24.93
Zm00001d015499_P003	Maize	nucleus	46.89	24.58
HORVU6Hr1G029290.9	Barley	nucleus, plastid	50.3	24.32
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	48.3	23.98
PGSC0003DMT400082365	Potato	cytosol	4.81	18.75
Os02t0179900-01	Rice	mitochondrion	0.6	1.25

Protein Annotations

EnsemblPlants:CDX88153	EnsemblPlantsGene:GSBRNA2T00147600001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS	InterPro:IPR006569
InterPro:IPR008942	ncoils:Coil	PANTHER:PTHR23140	PFscan:PS51391	ProteinID:CDX88153	ProteinID:CDX88153.1
SEG:seg	SMART:SM00582	UniParc:UPI0004EF2906	MapMan:16.4.1.2.10	:	:

Description

BnaA06g27440D

Coordinates

chrLK031854:-:961009..963774

Molecular Weight (calculated)

57952.9 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.854

Length

499 amino acids

Sequence
(BLAST)

001: MMIIQKEEYE TARPYQEFVE SFQGDNATKS FDRGGTINPS DKHKVDSEVC VRSPLFNFLF EPVSIEHTYY VWRLYSFAFD CLITKWRTEP YIMITGSGRW
101: IPPPRPVTKS LEHDKESTDT YAAGRSRREE VERTLTDPQR DEFEDMLRAL TLERSQIKEA IGFALDNADA AEEVVEVLTE SLTLNETSIP TKVARLLLVS
201: DILHNSSVPV KNASAYRTKF EAALPDIMES FNDLYRSITG RITAEALKVH SQTALAIGGR VVMVARLLSL EDTEKQRGYE AVDEIPKYPQ DHSGCEEVKN
301: EREVIRNSYA GVQMKEPMTI SISQPELKAF VEKEKNDLIL TASKWAREDD ETDDVQKKSY SPESDNTGGV TFKEFSLNRQ IWIKRHQFTL LLMFVPLSVA
401: ALYHSKLNRL LAYSEDSREP SKKRYRGETN SQSPPRKSST RERDHDLDRD RDRGRLRDRG RQHDLNRERD RLEKSSSHDR DDHGRSRERD RDWRRRDLR

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.