CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45333	Soybean	nucleus	94.39	85.14
VIT_04s0008g06810.t01	Wine grape	nucleus	81.35	73.76
Solyc03g025280.2.1	Tomato	nucleus	74.94	69.17
GSMUA_AchrUn_...	Banana	nucleus	71.4	68.87
Os02t0179900-01	Rice	mitochondrion	18.19	66.25
AT5G25060.1	Thale cress	nucleus	69.79	64.48
Bra036530.1-P	Field mustard	nucleus	68.76	64.28
CDY19818	Canola	nucleus	68.54	64.06
CDX87103	Canola	nucleus	68.31	63.78
EES04635	Sorghum	nucleus	68.42	63.28
AT5G10800.1	Thale cress	nucleus	68.31	63.04
TraesCS1D01G190900.4	Wheat	nucleus	68.08	62.7
TraesCS1A01G185900.1	Wheat	nucleus	68.08	62.7
TraesCS1B01G193700.1	Wheat	nucleus	68.08	62.7
TraesCS6D01G137800.4	Wheat	nucleus	67.16	61.47
TraesCS6A01G148500.2	Wheat	nucleus	67.05	61.36
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	68.08	59.2
TraesCS6B01G176700.1	Wheat	nucleus	67.39	58.26
Zm00001d015499_P003	Maize	nucleus	63.16	57.98
HORVU6Hr1G029290.9	Barley	nucleus, plastid	67.16	56.88
Bra009812.1-P	Field mustard	nucleus	29.18	54.26
Bra009813.1-P	Field mustard	nucleus	29.18	54.14
CDX88153	Canola	nucleus	29.86	52.3
CDY28356	Canola	nucleus	13.27	49.15
PGSC0003DMT400082365	Potato	cytosol	6.64	45.31
KRH07573	Soybean	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	UniProt:A0A0R0G0B2	EMBL:ACUP02010030
InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_16G095500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942
InterPro:IPR012677	InterPro:IPR035967	EnsemblPlants:KRH07572	ProteinID:KRH07572	ProteinID:KRH07572.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800
PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360
SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464
SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI00023D7D9E	InterPro:mRNA_splic_Cwf21_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr16:-:16973143..16981658

Molecular Weight (calculated)

99196.2 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.928

Length

874 amino acids

Sequence
(BLAST)

001: MATKGKESER KKEEEKPKEK EKGKSRNIDH FMEELKHEQE MRERRNQERE HWRDGRHTEH SISSRFDELP DDFDPSGKLP GSFDDGDPQT TNLYVGNLSP
101: KVDENFLLRT FGRFGPIASV KIMWPRTEEE RRRQRNCGFV AFMNRADGQA AKDEMQGVVV YEYELKIGWG KSVALPSQAL PAPPPGHMAI RSKEGSTVIL
201: SGPSGPPVTT VPNQNSELVL TPNVPDIMVT PPEDDHLRHV IDTMALYVLD GGCAFEQAIM ERGRGNPLFN FLFVLGSKEH TYYVWRLYSF AQGDTLQRWR
301: TEPFIMITGS GRWIPPPLPM SKSPEHEKEP GPTHAGGRSR RVEPERTLTD AQRDEFEDML RALTLERSQI KEAMGFSLDN ADAAGEVVEV LTESLTLKET
401: PIPTKIARLM LVSDILHNSS APVRNASAYR TKFEATLPDI MESFNDLYRS IMGRITAEAL KERVLKVLQV WADWFLFSDA YVNGLRATFL RPGNSGVIPF
501: HSICGDAPEI EQKTASEDMV VGGKTNQDAA LAMGRGAAMK ELMSLPLAEL ERRCRHNGLS LVGGREMMVA RLLSLEEAEK QKGFELDDEL KYAHNQVSSG
601: KYSSNQRETS AELDPVGLSA WNHYGDEDIQ SQGRSSVPLA PTLPIPQPKL KAFTKKEKND PVLPASKWAR EDDESDDEQR SGKNLGLSYS SSGSENVDDG
701: LVKADESESA ADRSFSAHAD SGMNEEQRQK LRRLEVALIE YGESLEERGI KNLEEIEKKV QLHRKRLQVE YGLSDSGEDG QGNRRTSERR DRHDVSRKRH
801: RSRSPSSSPQ PTLSGKDRDR EHDLERDRDR QRDRSHDFDS ERGRDRHREK SGSRERDDHD KDRSRDRDRR RRAK

Best Arabidopsis Sequence Match ( AT5G10800.1 )
(BLAST)

001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR

Arabidopsis Description

Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.