Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009813.1-P | Field mustard | nucleus | 100.0 | 99.79 |
| CDX88153 | Canola | nucleus | 77.66 | 73.15 |
| Bra036530.1-P | Field mustard | nucleus | 72.34 | 36.36 |
| AT5G25060.1 | Thale cress | nucleus | 72.77 | 36.15 |
| KRH07572 | Soybean | nucleus | 54.26 | 29.18 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 55.32 | 26.97 |
| KRH45333 | Soybean | nucleus | 55.53 | 26.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.28 | 26.6 |
| Solyc03g025280.2.1 | Tomato | nucleus | 52.98 | 26.29 |
| EES04635 | Sorghum | nucleus | 51.7 | 25.71 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 50.85 | 25.18 |
| TraesCS1D01G190900.4 | Wheat | nucleus | 50.64 | 25.08 |
| TraesCS1B01G193700.1 | Wheat | nucleus | 50.43 | 24.97 |
| TraesCS6D01G137800.4 | Wheat | nucleus | 49.36 | 24.29 |
| TraesCS6A01G148500.2 | Wheat | nucleus | 49.15 | 24.19 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 50.0 | 23.38 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 49.36 | 22.95 |
| HORVU6Hr1G029290.9 | Barley | nucleus, plastid | 48.94 | 22.29 |
| Zm00001d015499_P003 | Maize | nucleus | 44.26 | 21.85 |
| PGSC0003DMT400082365 | Potato | cytosol | 1.91 | 7.03 |
| KRH07573 | Soybean | nucleus | 1.06 | 5.81 |
| Os02t0179900-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
Description
AT5G25060 (E=2e-068) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA06:-:17432449..17435089
Molecular Weight (calculated)
54315.8 Da
IEP (calculated)
9.020
GRAVY (calculated)
-0.983
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIQKEEYET ARPYQNSWSP FKATMRLSLL IEVAPLTPAT STRLIPKGDT LQRWRTEPYI MITGSGRWIP PPRPVTKSLE HDKESTDTYA AGRSRREEVE
101: RTLTDPQRDE FEDMLRALTL ERSQIKEAIG FALDNADAAE EVVEVLTESL TLNETSIPTK VARLLLVSDI LHNSSVPVKN ASAYRTKFEA ALPDIMESFN
201: DLYRSITGRI TAEALKVHSQ TALAIGGRVV MVARLLSLED TEKQRGYEAV DEIPKYPQDH SSWGEVKNEC EVIRNSYAEV QMKEPMTISI SQPELKAFVE
301: KEKNDLILTA SKWAREDDET DDVQKKSYSP GSDNTGGVTF KVQIKRKKLI RIQRGQQKPS DSYTHVYYTL LLTAEKSIVE RKEKPEDSRE PSKKRHRGET
401: NSQSPPRKSS TRERDHDLDR NRDRGRLRDR GRQHDLNRER DRLEKSSSHD RDDHGRSRER DRDWRRRDLR
101: RTLTDPQRDE FEDMLRALTL ERSQIKEAIG FALDNADAAE EVVEVLTESL TLNETSIPTK VARLLLVSDI LHNSSVPVKN ASAYRTKFEA ALPDIMESFN
201: DLYRSITGRI TAEALKVHSQ TALAIGGRVV MVARLLSLED TEKQRGYEAV DEIPKYPQDH SSWGEVKNEC EVIRNSYAEV QMKEPMTISI SQPELKAFVE
301: KEKNDLILTA SKWAREDDET DDVQKKSYSP GSDNTGGVTF KVQIKRKKLI RIQRGQQKPS DSYTHVYYTL LLTAEKSIVE RKEKPEDSRE PSKKRHRGET
401: NSQSPPRKSS TRERDHDLDR NRDRGRLRDR GRQHDLNRER DRLEKSSSHD RDDHGRSRER DRDWRRRDLR
001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
Arabidopsis Description
RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.