Factsheet for GSMUA_AchrUn_randomP13060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07572	Soybean	nucleus	68.87	71.4
VIT_04s0008g06810.t01	Wine grape	nucleus	72.52	68.15
EES04635	Sorghum	nucleus	70.09	67.2
Os02t0179900-01	Rice	mitochondrion	17.77	67.08
TraesCS1D01G190900.4	Wheat	nucleus	69.43	66.28
TraesCS1B01G193700.1	Wheat	nucleus	69.21	66.07
TraesCS1A01G185900.1	Wheat	nucleus	68.98	65.86
Solyc03g025280.2.1	Tomato	nucleus	67.99	65.05
TraesCS6A01G148500.2	Wheat	nucleus	68.21	64.71
TraesCS6D01G137800.4	Wheat	nucleus	68.1	64.61
KRH45333	Soybean	nucleus	69.09	64.6
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	69.54	62.69
AT5G25060.1	Thale cress	nucleus	64.57	61.84
CDX87103	Canola	nucleus	63.47	61.43
Zm00001d015499_P003	Maize	nucleus	64.46	61.34
Bra036530.1-P	Field mustard	nucleus	63.13	61.18
CDY19818	Canola	nucleus	62.91	60.96
TraesCS6B01G176700.1	Wheat	nucleus	67.99	60.93
HORVU6Hr1G029290.9	Barley	nucleus, plastid	68.32	59.98
AT5G10800.1	Thale cress	nucleus	62.47	59.77
Bra009812.1-P	Field mustard	nucleus	26.6	51.28
Bra009813.1-P	Field mustard	nucleus	26.6	51.17
CDX88153	Canola	nucleus	27.04	49.1
PGSC0003DMT400082365	Potato	cytosol	5.96	42.19
CDY28356	Canola	nucleus	10.71	41.1
KRH07573	Soybean	nucleus	0.66	6.98

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	InterPro:CID_dom	ncoils:Coil
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG13060_001	EnsemblPlants:GSMUA_AchrUn_randomP13060_001
EnsemblPlants:GSMUA_AchrUn_randomT13060_001	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR012677
InterPro:IPR035967	UniProt:M0U8R5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01805	PFAM:PF08312
PFscan:PS50102	PFscan:PS50128	PFscan:PS51257	PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM
SUPFAM:SSF109905	SUPFAM:SSF48464	SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0002959029
InterPro:mRNA_splic_Cwf21_dom	SEG:seg	:	:	:	:

Description

RNA recognition motif, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13060_001]

Coordinates

chrchrUn_random:-:63169219..63187285

Molecular Weight (calculated)

102947.0 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.899

Length

906 amino acids

Sequence
(BLAST)

001: MKSLETTKDF IEKYTMVILN LSFSVGCKSE KGGRYVPSFL PPPSQGRELE KKDEEKPREK EKGKTRHIDK FLEELKFEQE LREKRNQERE GRHIDNSAPL
101: SRFDELPDDF DPSGKFPGSF DDGDPQTTNL YVGNLSPKVD ENFLLRTFGR FGPIASVKIM WPRTEEERRR QRNCGFVAFM NRADGQAAKD EMQGVVVYEY
201: ELKIGWGKSV ALPAQALPAP PPGHMAIRNK EGNTVIISGP DGAPVTTTQS SELVLTPNIP DIVVAPPEDD HLRHVIDTMA LYVLDGGCAF EQAVMERGRG
301: NSLFDFLFDL RSKEHTYYVW RLYSFAQGDT LQRWRTEPFI MITGSGRWIP PPLPANRSPE HDKESTSTFA AGRSKRVDLE RALTDPQRDE FEDMLRALTL
401: ERSQIREAMG FALDNADAAG EVVEVLTESL TLKETPVPTK VARLMLVSDI LHNSSAPVKN ASAYRTKFEA TLPDIMESFN DLYRSITGRI TAEALKERVL
501: KVLQVWADWF LFSDAYLNGL RATFLRSGNS GVLPFHSICG DAPEIENKTS YEETYEGGKV NQDAALAVGK GAAMKELLGL PMAELERRCR HNGLSLCGGR
601: EMMVARLLNL DEAERERGYD REDDMKYGQN QLYRYTKDDS SWNVSNAGLR ETNVETEKSP PALNQFGRGA TSWHDKGSIS LETVVAPNKK EKSDPVLVSK
701: WNREDDGSDD EDKSSQGLGL SYSSGSENAG DLGKTGAEVN MDPNVHTHPD TSINEEKRQK LRRLEVAVVE YRESLEERGL RNAEEIDKKV AVYRRQLESD
801: FGLSDTTDDL GSKKSSSERR SSERREKRDD VRDATRKRRR SRSHSHSPER KPSERARERH RDRDRSHEIE IGREGSREKS GSRERDDHHN RDKTRDREKD
901: RRRNEK

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.