Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19818 | Canola | nucleus | 94.92 | 23.96 |
| Bra036530.1-P | Field mustard | nucleus | 94.49 | 23.85 |
| CDX87103 | Canola | nucleus | 88.98 | 22.44 |
| CDX88153 | Canola | nucleus | 44.49 | 21.04 |
| AT5G25060.1 | Thale cress | nucleus | 79.24 | 19.77 |
| KRH07572 | Soybean | nucleus | 49.15 | 13.27 |
| KRH45333 | Soybean | nucleus | 49.58 | 12.07 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 49.15 | 12.03 |
| Solyc03g025280.2.1 | Tomato | nucleus | 46.61 | 11.62 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 43.22 | 10.75 |
| TraesCS1B01G193700.1 | Wheat | nucleus | 43.22 | 10.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.1 | 10.71 |
| TraesCS1D01G190900.4 | Wheat | nucleus | 42.8 | 10.64 |
| EES04635 | Sorghum | nucleus | 41.95 | 10.48 |
| TraesCS6A01G148500.2 | Wheat | nucleus | 42.37 | 10.47 |
| TraesCS6D01G137800.4 | Wheat | nucleus | 41.53 | 10.26 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 41.53 | 9.69 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 40.68 | 9.55 |
| HORVU6Hr1G029290.9 | Barley | nucleus, plastid | 41.53 | 9.5 |
| Zm00001d015499_P003 | Maize | nucleus | 24.15 | 5.99 |
| PGSC0003DMT400082365 | Potato | cytosol | 2.97 | 5.47 |
| Os02t0179900-01 | Rice | mitochondrion | 2.12 | 2.08 |
| KRH07573 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY28356 | EnsemblPlantsGene:GSBRNA2T00040145001 | InterPro:mRNA_splic_Cwf21_dom | PFAM:PF08312 | ProteinID:CDY28356 | ProteinID:CDY28356.1 |
| SEG:seg | SMART:SM01115 | UniParc:UPI0004EDAE29 | UniProt:A0A078GS58 | MapMan:35.1 | : |
Description
BnaC01g35260DBnaC01g35260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS58]
Coordinates
chrLK032218:-:135908..137386
Molecular Weight (calculated)
27864.8 Da
IEP (calculated)
7.834
GRAVY (calculated)
-1.861
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLATTIPIP QPELKAFVGT EKSDLLLTAS KWAKEDDEAD DEQNKSYSPG SDNTGGITFK ADDEDLKSND RVRAQPDNGM DEEQRQKRRR IEVALIEYRE
101: TLEEQGMKNS EEIEKKVEIK RKRLEVDYGL SGSNEGSKNQ KSTVERKERP TEDSRESSKK RQRGENQSQS PPRKSSTRER DHDLDRDRDR GRLRDRDRQH
201: DLSRDRDRRE KSLSHERDDH DKSRERDREW RRRGTR
101: TLEEQGMKNS EEIEKKVEIK RKRLEVDYGL SGSNEGSKNQ KSTVERKERP TEDSRESSKK RQRGENQSQS PPRKSSTRER DHDLDRDRDR GRLRDRDRQH
201: DLSRDRDRRE KSLSHERDDH DKSRERDREW RRRGTR
001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
Arabidopsis Description
RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.