Factsheet for Solyc03g025280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07573	Soybean	nucleus	7.07	77.91
VIT_04s0008g06810.t01	Wine grape	nucleus	77.19	75.83
KRH07572	Soybean	nucleus	69.17	74.94
KRH45333	Soybean	nucleus	76.35	74.61
AT5G25060.1	Thale cress	nucleus	70.22	70.3
CDX87103	Canola	nucleus	68.53	69.34
Bra036530.1-P	Field mustard	nucleus	68.43	69.3
CDY19818	Canola	nucleus	68.22	69.09
EES04635	Sorghum	nucleus	67.9	68.04
GSMUA_AchrUn_...	Banana	nucleus	65.05	67.99
TraesCS1D01G190900.4	Wheat	nucleus	67.37	67.23
TraesCS1B01G193700.1	Wheat	nucleus	67.16	67.02
TraesCS1A01G185900.1	Wheat	nucleus	67.05	66.91
TraesCS6D01G137800.4	Wheat	nucleus	66.42	65.86
TraesCS6A01G148500.2	Wheat	nucleus	66.42	65.86
Os02t0179900-01	Rice	mitochondrion	16.37	64.58
AT5G10800.1	Thale cress	nucleus	63.15	63.15
Zm00001d015499_P003	Maize	nucleus	62.83	62.5
TraesCS6B01G176700.1	Wheat	nucleus	66.63	62.41
HORVU6Hr1G029290.9	Barley	nucleus, plastid	66.31	60.85
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	62.62	59.01
CDX88153	Canola	nucleus	28.83	54.71
Bra009812.1-P	Field mustard	nucleus	26.29	52.98
Bra009813.1-P	Field mustard	nucleus	26.29	52.87
CDY28356	Canola	nucleus	11.62	46.61
PGSC0003DMT400082365	Potato	cytosol	6.02	44.53

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	InterPro:CID_dom	ncoils:Coil
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000504
InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR012677	InterPro:IPR035967	UniProt:K4BF01
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128
PFscan:PS50800	PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom
SMART:SM00360	SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905
SUPFAM:SSF48464	SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	EnsemblPlantsGene:Solyc03g025280.2	EnsemblPlants:Solyc03g025280.2.1	InterPro:Surp
UniParc:UPI0002768AC4	InterPro:mRNA_splic_Cwf21_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:2715367..2733398

Molecular Weight (calculated)

106958.0 Da

IEP (calculated)

6.539

GRAVY (calculated)

-0.943

Length

947 amino acids

Sequence
(BLAST)

001: MSARKKTPFQ KHREEEEAKK KRAEDETARL YQEFVESFQA DSTPGSKAFV RGGTINPNDK LKMDSQGGNS KDEGSGLKKG SRYVPSFLPP PMATKGRDHE
101: KKKEDKPREK EKGKARNIDN FMEELKHEQE MRERRNQDRE QWRDRHTENS APSSRFDELP DDFDPSGRPG SFDDGDPQTT NLYVGNLSPQ VDENFLLRTF
201: GRFGPIASVK IMWPRTEEER RRQRNCGFVA FMNRADAQAA KDEMEGVIVY EYELKIGWGK SVSLPSQALP APPPGHMAIR SKEGATVILS GPSGPPVTTV
301: PGQNSELVLT PNVPDIMVIP PEDDHLRHVI DTMALCVLDG GCAFEQAIME RGRGNPLFSF LFELGSKEHT YYVWRLYSFA QGDTLQRWRT VPFIMITGSG
401: RWIPPSLPTP KGADHEKEAG STYAAGRSRR VDVERTLTDA QRDEFEDMLR SLTLERSQIK EAMGFSLDNA DAAGEVVEVL TESLTLKETP IPTKVSRLML
501: VSDILHNSSA PVKNASAYRT KFEASLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY VNGLRATFLR TGNSGVTPFH SLCGDAPDVE
601: QRTSSDDAGD GGKVNPDGAL AIGKGAAMKE LLSLPLTELE RRCRHNGLSI VGGREMMVAR LLYLEEAEKQ RGHELDEDLK FASHSSSARF PSTRKDSNLE
701: LDRMAPSERN SQMDYDVQLK QRESVSSHQI NSAPHYNSID FSSDGKSETI LPTSKWARED DESDDEQKRS SRDLGLTYSS SGSENAGDGL SKIKDAELTT
801: DTGNSAYPES GMNEELRQKL RRLEVALIEY RESLEEQGIK NPDEIERKVE IHRQCLQSEY GLLNFSEDTS KKGGRSSSER KEKRDDAREA SRKRQRSRSR
901: SGSPQWKSSS RDRDSDREKR RDRGRKSGSR ERDDHDRDKS RERRRAR

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.