Factsheet for VIT_04s0008g06810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07573	Soybean	nucleus	8.09	90.7
KRH07572	Soybean	nucleus	73.76	81.35
KRH45333	Soybean	nucleus	80.91	80.5
Solyc03g025280.2.1	Tomato	nucleus	75.83	77.19
AT5G25060.1	Thale cress	nucleus	72.61	74.0
Bra036530.1-P	Field mustard	nucleus	71.47	73.69
CDY19818	Canola	nucleus	71.27	73.48
CDX87103	Canola	nucleus	71.27	73.4
GSMUA_AchrUn_...	Banana	nucleus	68.15	72.52
TraesCS1A01G185900.1	Wheat	nucleus	70.33	71.44
EES04635	Sorghum	nucleus	69.92	71.32
TraesCS1D01G190900.4	Wheat	nucleus	70.12	71.23
TraesCS1B01G193700.1	Wheat	nucleus	70.12	71.23
TraesCS6A01G148500.2	Wheat	nucleus	69.09	69.74
TraesCS6D01G137800.4	Wheat	nucleus	68.98	69.63
Os02t0179900-01	Rice	mitochondrion	16.6	66.67
Zm00001d015499_P003	Maize	nucleus	65.77	66.6
AT5G10800.1	Thale cress	nucleus	65.35	66.53
TraesCS6B01G176700.1	Wheat	nucleus	68.88	65.68
HORVU6Hr1G029290.9	Barley	nucleus, plastid	68.67	64.15
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	65.04	62.39
CDX88153	Canola	nucleus	29.67	57.31
Bra009812.1-P	Field mustard	nucleus	26.97	55.32
Bra009813.1-P	Field mustard	nucleus	26.97	55.2
CDY28356	Canola	nucleus	12.03	49.15
PGSC0003DMT400082365	Potato	cytosol	6.43	48.44

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	EntrezGene:100262865	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	ProteinID:CCB46875
ProteinID:CCB46875.1	InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	UniProt:F6H346	EMBL:FN595231
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034
InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR012677	InterPro:IPR035967	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800	PFscan:PS51391
PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360	SMART:SM00582
SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464	SUPFAM:SSF54928
InterPro:SWAP/Surp_sf	InterPro:Surp	TIGR:TC71078	UniParc:UPI0002109A84	ArrayExpress:VIT_04s0008g06810	EnsemblPlantsGene:VIT_04s0008g06810
EnsemblPlants:VIT_04s0008g06810.t01	unigene:Vvi.6580	RefSeq:XP_010648761.1	RefSeq:XP_010648762.1	InterPro:mRNA_splic_Cwf21_dom	SEG:seg

Description

No Description!

Coordinates

chr4:+:6815114..6844246

Molecular Weight (calculated)

109096.0 Da

IEP (calculated)

6.234

GRAVY (calculated)

-0.976

Length

964 amino acids

Sequence
(BLAST)

001: MSSFSITRKK TPFQKHREEE EAKKKRAEDE TARLYAEFVE SFQGDNAPGS KTFVRGGTIN PNERVKTESE GEKSKDGVSV PKKGSRYVPS FIPPPLAAKG
101: KEPDKKKEEE KPKEREKGKS RNIDHFMEEL KHEQEMRERR NQERDQWRDG RHNDSSALPS RFDELPDDFD PSGKLPGSFD DGDPQTTNLY VGNLSPQVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEERRRQ RNCGFVAFMN RADGQAAKDE MQGVVVYEYE LKIGWGKSVS LPSQALPAPP PGHMAIRSKE GATVILSGPS
301: GPPVTSVPNQ NSELVLTPNV PDIMVSPPED DHLHHVIDTM ALYVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPF
401: IMITGSGRWM PPPLPTVRSP EHEKESGTTF AAGRSRRVEL ERTLTDPQRD EFEDMLRALT LERSQIKEAM GFALDNADAA GEIVEVLTES LTLKETPIPT
501: KVARLMLVSD VLHNSSAPVK NASAYRTKFE ATLPDIMESF NDLYRSVTGR ITAEALKERV MKVLQVWADW FLFSDAYVNG LRATFLRSGN SGVTPFHSIC
601: GDAPEIEKKT SSEDTGEGGK SNQDAALAMG KGAAMKELLS LPIAELERRC RHNGLSLVGG REIMVARLLS LEEAEKQRGY DLDDDLKYAQ SHSNSGRYPS
701: SRKEIGVETE SVGLSGWNRY GEDEIQSQGK GSVPLAPTIP IPQPELKAFT NKGKTDPVLP ASKWAREDDD SDDEQKRSAR GLGLSYSSSG SENAGDGPSK
801: ADEMEFATES SIPSQPDSGM MNEEHRQKLR RLEVALIEYR ESLEERGIKS SEEIERKVAI HRKRLQSEYG LSDSNEDVSW NKRSSAERRD RRDDSRETTR
901: KRHRSRSQSE DGDRERHRDR SHDPESEKGR DRERDREKSG SREREDHDRD RGRERERDRR RRVK

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.