CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07573	Soybean	nucleus	8.88	100.0
KRH07572	Soybean	nucleus	85.14	94.39
VIT_04s0008g06810.t01	Wine grape	nucleus	80.5	80.91
Solyc03g025280.2.1	Tomato	nucleus	74.61	76.35
AT5G25060.1	Thale cress	nucleus	71.21	72.94
Bra036530.1-P	Field mustard	nucleus	70.07	72.62
CDY19818	Canola	nucleus	69.87	72.41
CDX87103	Canola	nucleus	69.76	72.22
EES04635	Sorghum	nucleus	68.01	69.74
TraesCS1D01G190900.4	Wheat	nucleus	68.11	69.55
TraesCS1A01G185900.1	Wheat	nucleus	68.01	69.44
TraesCS1B01G193700.1	Wheat	nucleus	68.01	69.44
GSMUA_AchrUn_...	Banana	nucleus	64.6	69.09
TraesCS6D01G137800.4	Wheat	nucleus	66.56	67.54
TraesCS6A01G148500.2	Wheat	nucleus	66.46	67.43
Os02t0179900-01	Rice	mitochondrion	16.62	67.08
AT5G10800.1	Thale cress	nucleus	65.12	66.63
Zm00001d015499_P003	Maize	nucleus	63.16	64.29
TraesCS6B01G176700.1	Wheat	nucleus	66.77	64.0
HORVU6Hr1G029290.9	Barley	nucleus, plastid	66.67	62.6
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	63.05	60.8
CDX88153	Canola	nucleus	29.82	57.92
Bra009812.1-P	Field mustard	nucleus	26.93	55.53
Bra009813.1-P	Field mustard	nucleus	26.93	55.41
CDY28356	Canola	nucleus	12.07	49.58
PGSC0003DMT400082365	Potato	cytosol	5.78	43.75

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	EntrezGene:100775729	MapMan:16.4.1.2.10	EMBL:ACUP02005184	InterPro:CID_dom
ncoils:Coil	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_08G265300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
UniProt:I1KWX3	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942
InterPro:IPR035967	EnsemblPlants:KRH45333	ProteinID:KRH45333	ProteinID:KRH45333.1	ProteinID:KRH45334.1	ProteinID:KRH45335.1
ProteinID:KRH45336.1	PFAM:PF00076	PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128
PFscan:PS50800	PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom
SMART:SM00360	SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905
SUPFAM:SSF48464	SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI00023CA48C	InterPro:mRNA_splic_Cwf21_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:31500301..31521787

Molecular Weight (calculated)

110163.0 Da

IEP (calculated)

6.620

GRAVY (calculated)

-0.968

Length

969 amino acids

Sequence
(BLAST)

001: MSSFSITRKK TPFQKHREEE EAKKKRAEDE TARLYAEFVE SFQGDTTPGS KTFVRGGTIN PNDKFKDDSE GEKSKDGVSG PKKGSRYVPS FIPPPMATKG
101: KESERKKEEE KLKEKEKGKA RNIDHFMEEL KHEQEMRERR NQEREHWRDG RLTEHSISSR FDELPDDFDP SGKLPGSFDD GDPQTTNLYV GNLSPKVDEN
201: FLLRTFGRFG PIASVKIMWP RTEEERRRQR NCGFVAFMNR ADGQAAKDEM QGVVVYEYEL KIGWGKSVAL PSQALPAPPP GHMAIRSKEG STVILSGPSG
301: PPVTSVPNQN SELVLTPNVP DIMVTPPEDE HLRHVIDTMA LHVLDGGCAF EQAIMERGRG NPLFNFLFIL GSKEHTYYVW RLYSFAQGDT LQRWRTEPFI
401: MITGSGRWIP PQLPMSKSPE HEKESGSTHA GGRSRRVEPD RTLTDAQRDE FEDMLRALTL ERSQIKEAMG FSLDNADAAG EIVEVLTESL TLKETPIPTK
501: IARLMLVSDI LHNSSAPVRN ASAYRTKFEA TLPDIMESFN DLYRSIMGRI TAEALKERVL KVLQVWADWF LFSDAYVNGL RATFLRPGNS GVIPFHSICG
601: DAPEIEQNTT SKDMVVGGKT NQDAALAMGR GAAMKELMSL PLAELERRCR HNGLSLVGGR EMMVARLLSL EEAEKQRGFE LDEELKYAHN QVSSGKYSSN
701: QRETSEEPDP VWNHYGDEDL QSQGRSSVPL SPTLPIAQPE LKAFTKKEKN DPVLPASKWA WEGDESDDEQ RRSGKNIGLS YSSSGSENVG DGLVKADESE
801: SAADTRFSAH ADSGMNEEQR QKLRRLEVAL IEYRESLEER GVKNLEEIEK KVQSHRKRLQ VEYGLSDSGE DGHGHRRTSE RRDWNDVSRK RHRSPSPSGS
901: PLPKLYGKDR DREHHDLERD RDRQRDRSHD FDSERGRDRH REKSGSRERD DHDKDRSRDR DRDRRRRAK

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.