CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19818	Canola	nucleus	97.22	97.33
CDY28356	Canola	nucleus	22.44	88.98
AT5G25060.1	Thale cress	nucleus	88.25	87.31
KRH07573	Soybean	nucleus	7.48	81.4
CDX88153	Canola	nucleus	38.35	71.94
VIT_04s0008g06810.t01	Wine grape	nucleus	73.4	71.27
KRH45333	Soybean	nucleus	72.22	69.76
Solyc03g025280.2.1	Tomato	nucleus	69.34	68.53
KRH07572	Soybean	nucleus	63.78	68.31
EES04635	Sorghum	nucleus	65.6	64.97
TraesCS1A01G185900.1	Wheat	nucleus	65.71	64.81
TraesCS1D01G190900.4	Wheat	nucleus	65.71	64.81
TraesCS1B01G193700.1	Wheat	nucleus	65.49	64.59
GSMUA_AchrUn_...	Banana	nucleus	61.43	63.47
TraesCS6A01G148500.2	Wheat	nucleus	64.42	63.14
TraesCS6D01G137800.4	Wheat	nucleus	64.32	63.04
Os02t0179900-01	Rice	mitochondrion	15.71	61.25
Zm00001d015499_P003	Maize	nucleus	61.11	60.08
TraesCS6B01G176700.1	Wheat	nucleus	64.53	59.74
HORVU6Hr1G029290.9	Barley	nucleus, plastid	64.32	58.33
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	60.79	56.62
PGSC0003DMT400082365	Potato	cytosol	6.09	44.53

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	GO:A0A078DIK4	EnsemblPlants:CDX87103
ProteinID:CDX87103	ProteinID:CDX87103.1	InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00146004001	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034
InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR012677	InterPro:IPR035967	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800	PFscan:PS51391
PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360	SMART:SM00582
SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464	SUPFAM:SSF54928
InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0004EE64DF	InterPro:mRNA_splic_Cwf21_dom	SEG:seg	:

Description

BnaC09g04180D

Coordinates

chrLK031849:+:475559..481406

Molecular Weight (calculated)

107042.0 Da

IEP (calculated)

6.112

GRAVY (calculated)

-0.991

Length

936 amino acids

Sequence
(BLAST)

001: MSSFSITRKK TPFQKHKEEE EARKKKAEDE TARLYQEFVE SFQGESGTKT FVRGGTINPG DKPKADSEGE KSKDGGSVSK KGSRYVPSFL PPPMASKGKE
101: TERKREEERP KERDKGKTRN IDNFMEELKR EQEMRERRNQ DRDRQGDSSP TSRFDELPDD FDPTGRLGSF DDGDPQTTNL YVGNLSPKVD ENFLLRTFGR
201: FGPIASVKIM WPRTDEEKRR QRNCGFVSFM HRADGQAAKD EMQGIIVYDY ELKIGWGKAV SLPSQALPAP PPGHMAIRSK EGCNLIFSGQ SGPPIITSVP
301: TQNSELFLTP NVPDITVVTP ENEHLRHVID TMALYVLDGE CAFEQAIMER GRGNPLFSFL FELGSKEHTY YVWRLYSFAQ GDTLQRWRTE PYIMITGSGR
401: WIPPPLPVNK SLEHEKESTS TYAAGRSRRA EVERPLTDPQ RDDFEDMLRA LTLERSQIKE AMGFALDNAD AAGEVVEVLT ESLTLKETSI PTKVARLLLV
501: SDILHNSSAP VKNASAYRTK FEATLPDIME SFNDLYRSIT GRITAEALKE RVLKVLQVWA DWFLFSDAYI SGLRTTFLRS GISGVTSFHS ICGDAPEIEK
601: KGYNDISDIG YPDSALAIGK EGARQELMDL PISELERRCR HNGLSLVGGR VVMVARLLSL EDTEKQRGYE VADEISKYPQ QDHSTWEEVR NVTEVEMKEP
701: MSLTTTIPIP QPELKAFVGK EKSDLLLTAS KWAKEDDEAD DEQQKNYSPG SGNAGGITFK ADDEDLKDSD RVRTQPDNGM DEEQRQKRRR IEVALIEYRE
801: TLEEQGMKNS EEIEKKVEIK RRRLEVDYGL TGSNEGNKNK KSTVERKERP PEDSRESSKK RQRGENQSAS PPRKSSTRER DHDLDRDRDR GRLRDRDRQH
901: DLNRDRDRRE KSLSHERDDH DKSRERDREW RRRGTR

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.