Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G137800.4 | Wheat | nucleus | 99.06 | 99.06 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 97.49 | 92.09 |
| HORVU6Hr1G029290.9 | Barley | nucleus, plastid | 96.44 | 89.24 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 88.06 | 88.62 |
| EES04635 | Sorghum | nucleus | 80.73 | 81.59 |
| Zm00001d015499_P003 | Maize | nucleus | 72.88 | 73.11 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 74.45 | 70.75 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 69.74 | 69.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.71 | 68.21 |
| Os02t0179900-01 | Rice | mitochondrion | 16.96 | 67.5 |
| KRH07572 | Soybean | nucleus | 61.36 | 67.05 |
| KRH45333 | Soybean | nucleus | 67.43 | 66.46 |
| Solyc03g025280.2.1 | Tomato | nucleus | 65.86 | 66.42 |
| CDX87103 | Canola | nucleus | 63.14 | 64.42 |
| Bra036530.1-P | Field mustard | nucleus | 62.83 | 64.17 |
| CDY19818 | Canola | nucleus | 62.62 | 63.96 |
| AT5G25060.1 | Thale cress | nucleus | 62.93 | 63.53 |
| AT5G10800.1 | Thale cress | nucleus | 58.85 | 59.35 |
| KRH07573 | Soybean | nucleus | 5.34 | 59.3 |
| CDX88153 | Canola | nucleus | 26.39 | 50.5 |
| Bra009812.1-P | Field mustard | nucleus | 24.19 | 49.15 |
| Bra009813.1-P | Field mustard | nucleus | 24.19 | 49.04 |
| PGSC0003DMT400082365 | Potato | cytosol | 5.76 | 42.97 |
| CDY28356 | Canola | nucleus | 10.47 | 42.37 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:1.25.40.90 | MapMan:16.4.1.2.10 | Gene3D:3.30.70.330 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR000504 |
| InterPro:IPR003034 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR012677 | InterPro:IPR035967 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF01805 | PFAM:PF08312 | PFscan:PS50102 | PFscan:PS50128 | PFscan:PS50800 |
| PFscan:PS51391 | PANTHER:PTHR23140 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SAP_dom | SMART:SM00360 |
| SMART:SM00582 | SMART:SM00648 | SMART:SM01115 | InterPro:SR140_RRM | SUPFAM:SSF109905 | SUPFAM:SSF48464 |
| SUPFAM:SSF54928 | InterPro:SWAP/Surp_sf | InterPro:Surp | EnsemblPlantsGene:TraesCS6A01G148500 | EnsemblPlants:TraesCS6A01G148500.2 | TIGR:cd12223 |
| InterPro:mRNA_splic_Cwf21_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:129738349..129745636
Molecular Weight (calculated)
107372.0 Da
IEP (calculated)
7.532
GRAVY (calculated)
-0.858
Length
955 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKVPFNR HKENEEARKK REEDEAARVY AEFVKSFEGE SASGSKFVRG GVIDPNAKLR ADSEGGNSKD RGSVPKKGSR YVPSFVPPSF GREPEKKMED
101: ERPKEKERGK PRAIDTVMEE LKLEKELRER RNQERASRHG DTSVPSSRFD ELPDEFDPTG RLPGSFDDGD PQTTNLYVGN LSPKVDENFL LRTFGRFGPI
201: ASVKIMWPRT EEERKRQRHC GFVAFMNRAE GQAAKDEMQG VVVYDYELKI GWGKSVALPS QALPAPPPGH MAIRNKEGGT VIISGPGGPP VASVTQQTSE
301: LVLTPNVPDI MVAPPDDSHL RHVIDTMALH VLDGGCAFEQ AIMERGRGKA LFNFLFDLKS KEHTYYVWRL YSFAQGDTLQ RWRTEPFIMI TGSGRWVPPA
401: LPSSRSPDRE KESTFAAGRT RRVEVERTLT ETQRDEFEDM LRALTLERSQ IREAMGFALD NADAAGEIVE VLVESLTLKE TPIPTKVARL MLVSDILHNS
501: SAPVKNASAF RTKFETAIPD VMESFNDLYC SITGRITAEA LKERVLKVLQ VWADWFLFSD AYLNGLKATF LRPGNSGVTS FHSLCGDAPE IEKKTSSEDN
601: NGFRLDEDGA LATGKAAATK ELLSLPLAEL ERRCRHNGLS LCGGKETMVA RLLSLEEAEK EQVYQKDVAM KYVQGEPHRA GREDVGLNAR RLGDGTGDSE
701: SDMLGLSRHS MQTGQRRSRE CVSPEPEQVS SKKQKADPVL PASKWNREDN DNDEDRINGQ GLGLSYSSGS DIAGDSGKVD TTEISTDQAI HHPDTIVDEE
801: HSSNSFLIYR QKLRQIEIAV MQYRESLEEK GLHSMEEIER KVASHRRRLQ SDYGLSSIDG ANNRWSSERL SLERRERADD ARDSSRKRPR SRSRSRSPSR
901: KSSLDRDREY NRSRGRLHGN DAGRDRAREK SSGRGKDDHH DRSSRDREKD RRTGR
101: ERPKEKERGK PRAIDTVMEE LKLEKELRER RNQERASRHG DTSVPSSRFD ELPDEFDPTG RLPGSFDDGD PQTTNLYVGN LSPKVDENFL LRTFGRFGPI
201: ASVKIMWPRT EEERKRQRHC GFVAFMNRAE GQAAKDEMQG VVVYDYELKI GWGKSVALPS QALPAPPPGH MAIRNKEGGT VIISGPGGPP VASVTQQTSE
301: LVLTPNVPDI MVAPPDDSHL RHVIDTMALH VLDGGCAFEQ AIMERGRGKA LFNFLFDLKS KEHTYYVWRL YSFAQGDTLQ RWRTEPFIMI TGSGRWVPPA
401: LPSSRSPDRE KESTFAAGRT RRVEVERTLT ETQRDEFEDM LRALTLERSQ IREAMGFALD NADAAGEIVE VLVESLTLKE TPIPTKVARL MLVSDILHNS
501: SAPVKNASAF RTKFETAIPD VMESFNDLYC SITGRITAEA LKERVLKVLQ VWADWFLFSD AYLNGLKATF LRPGNSGVTS FHSLCGDAPE IEKKTSSEDN
601: NGFRLDEDGA LATGKAAATK ELLSLPLAEL ERRCRHNGLS LCGGKETMVA RLLSLEEAEK EQVYQKDVAM KYVQGEPHRA GREDVGLNAR RLGDGTGDSE
701: SDMLGLSRHS MQTGQRRSRE CVSPEPEQVS SKKQKADPVL PASKWNREDN DNDEDRINGQ GLGLSYSSGS DIAGDSGKVD TTEISTDQAI HHPDTIVDEE
801: HSSNSFLIYR QKLRQIEIAV MQYRESLEEK GLHSMEEIER KVASHRRRLQ SDYGLSSIDG ANNRWSSERL SLERRERADD ARDSSRKRPR SRSRSRSPSR
901: KSSLDRDREY NRSRGRLHGN DAGRDRAREK SSGRGKDDHH DRSSRDREKD RRTGR
001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
Arabidopsis Description
Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.