Factsheet for Zm00001d015495_P013

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04635	Sorghum	nucleus	81.69	86.88
Zm00001d015499_P003	Maize	nucleus	76.82	81.09
TraesCS1B01G193700.1	Wheat	nucleus	73.13	77.45
TraesCS1D01G190900.4	Wheat	nucleus	72.84	77.13
TraesCS1A01G185900.1	Wheat	nucleus	72.64	76.92
TraesCS6D01G137800.4	Wheat	nucleus	71.04	74.76
TraesCS6A01G148500.2	Wheat	nucleus	70.75	74.45
TraesCS6B01G176700.1	Wheat	nucleus	71.54	71.12
GSMUA_AchrUn_...	Banana	nucleus	62.69	69.54
HORVU6Hr1G029290.9	Barley	nucleus, plastid	70.85	68.99
KRH07572	Soybean	nucleus	59.2	68.08
Os02t0179900-01	Rice	mitochondrion	16.12	67.5
VIT_04s0008g06810.t01	Wine grape	nucleus	62.39	65.04
KRH45333	Soybean	nucleus	60.8	63.05
Solyc03g025280.2.1	Tomato	nucleus	59.01	62.62
CDX87103	Canola	nucleus	56.62	60.79
Bra036530.1-P	Field mustard	nucleus	56.42	60.64
AT5G25060.1	Thale cress	nucleus	57.01	60.57
CDY19818	Canola	nucleus	56.22	60.43
AT5G10800.1	Thale cress	nucleus	55.82	59.24
Bra009812.1-P	Field mustard	nucleus	23.38	50.0
Bra009813.1-P	Field mustard	nucleus	23.38	49.89
CDX88153	Canola	nucleus	23.98	48.3
PGSC0003DMT400082365	Potato	cytosol	5.47	42.97
CDY28356	Canola	nucleus	9.55	40.68
KRH07573	Soybean	nucleus	1.09	12.79

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	EntrezGene:100304259	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	UniProt:A0A1D6H2E4
ProteinID:AQK69024.1	InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942
InterPro:IPR012677	InterPro:IPR035967	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01805	PFAM:PF08312
PFscan:PS50102	PFscan:PS50128	PFscan:PS50800	PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360	SMART:SM00582	SMART:SM00648	SMART:SM01115
InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0008438569
EnsemblPlantsGene:Zm00001d015495	EnsemblPlants:Zm00001d015495_P013	EnsemblPlants:Zm00001d015495_T013	InterPro:mRNA_splic_Cwf21_dom	SEG:seg	:

Description

Protein RRC1

Coordinates

chr5:+:93679139..93695551

Molecular Weight (calculated)

112602.0 Da

IEP (calculated)

6.703

GRAVY (calculated)

-0.786

Length

1005 amino acids

Sequence
(BLAST)

0001: MAVDSQQVVA GFLTLSMFVM LGNMIKHDHF SPVTEELGLE ATGVVSNTRK LDNNAEMSSV DTTGVEDLMD AVEEVKPCWT KPKNQSSNGF VTFSLTMGPE
0101: YHISQITDVV VIARYVPSFL PPSFAKEPEK KKEGERPKEK EKGKPRVIDR FLEEIKLEQE QREKRHQDRD HRREGRHGDS SMSSSRFDEL PDEFDPTGRF
0201: PGSFDDGDPQ TTNLYVGNLS PKVDENFLLR TFGRFGPIAS VKIMWPRTEE ERRRQRNCGF VAFMNRTDGQ AAKDEMQGVI VYDYELKIGW GKSVALPSQA
0301: LPAPPPGHMA IRNKEGGTAT VILSGPGGPA VASIKPQTSE LVLTPNVPDI VVAPPDDGHL RHVIDTMALH VLDGGCAFEQ AVMERGRGNP LFDFLFNLKS
0401: KEHTYYVWRL YSFAQGDTLQ RWRTEPYIMI TGSGRWVPPP LSSNRSPERE KESTFAAGRS RRVEVERTLT DSQRDEFEDM LRALTLERSQ IKDAMGFALD
0501: NADAAGEVYT RSPTLRPVDS LMIVEVLTES LTLKETSIPT KVARLMLVSD ILHNSSAPVK NASAFRTKFE ASLPDVMESF NDLYRSITGR ITAEALKERV
0601: MKVLQVWADW FLFSDAFLNG LRATFLRSGN SGVVPFHSLC GDAPEIEKKG SSEDGNDGFK LNEDGALATG KAAATKELLG LPLAELERRC RHNGLSLCGG
0701: KEMMVARLLN LEEAEKERIY EKDVDMKYVQ GEQHVVGRED SGVNAHSTSR FGEGSNGDEL DVSRNSTRAG KGRSGGSASA ELESFPSKKP KYDPVLPASK
0801: WSREDDISDD EDRKGGRGLG LSYSSGSDIA DGLGKVDTTE ASTDHTSRHH DTIVDEEHRQ KLRQIEISVM QYRESLEEQG LRDLDEIERK VASHRRRLQS
0901: EYGLSTPADG ANSRRSSERT SSSSERKERH RDAHDHPRKR GRSQSRSLSP PRKSQERDRE HNRGRDRSHG NDVGRDRVRG KSASQGRDDH HDRSRDREKD
1001: RRKGR

Best Arabidopsis Sequence Match ( AT5G10800.1 )
(BLAST)

001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR

Arabidopsis Description

Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.