Factsheet for Os02t0179900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07572	Soybean	nucleus	66.25	18.19
GSMUA_AchrUn_...	Banana	nucleus	67.08	17.77
EES04635	Sorghum	nucleus	69.58	17.67
Zm00001d015499_P003	Maize	nucleus	68.33	17.23
TraesCS1A01G185900.1	Wheat	nucleus	67.92	17.18
TraesCS1B01G193700.1	Wheat	nucleus	67.92	17.18
TraesCS1D01G190900.4	Wheat	nucleus	67.5	17.07
TraesCS6D01G137800.4	Wheat	nucleus	67.5	16.96
TraesCS6A01G148500.2	Wheat	nucleus	67.5	16.96
KRH45333	Soybean	nucleus	67.08	16.62
VIT_04s0008g06810.t01	Wine grape	nucleus	66.67	16.6
Solyc03g025280.2.1	Tomato	nucleus	64.58	16.37
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	67.5	16.12
TraesCS6B01G176700.1	Wheat	nucleus	67.5	16.02
HORVU6Hr1G029290.9	Barley	nucleus, plastid	67.92	15.79
CDX87103	Canola	nucleus	61.25	15.71
Bra036530.1-P	Field mustard	nucleus	60.83	15.62
CDY19818	Canola	nucleus	60.83	15.62
AT5G25060.1	Thale cress	nucleus	61.25	15.54
AT5G10800.1	Thale cress	nucleus	57.92	14.68
PGSC0003DMT400082365	Potato	cytosol	2.5	4.69
KRH07573	Soybean	nucleus	1.25	3.49
CDY28356	Canola	nucleus	2.08	2.12
CDX88153	Canola	nucleus	1.25	0.6
Bra009813.1-P	Field mustard	nucleus	0.0	0.0
Bra009812.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

MapMan:16.4.1.2.10	Gene3D:3.30.70.330	UniProt:A0A0P0VFG2	ProteinID:BAS77296.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os02g0179900	EnsemblPlants:Os02t0179900-01
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
InterPro:SR140_RRM	SUPFAM:SSF54928	UniParc:UPI0003939BFA	SEG:seg	:	:

Description

Similar to Negative elongation factor E (NELF-E) (RD protein). Splice isoform 2. (Os02t0179900-01)

Coordinates

chr2:+:4440186..4448543

Molecular Weight (calculated)

28107.5 Da

IEP (calculated)

9.004

GRAVY (calculated)

-0.832

Length

240 amino acids

Sequence
(BLAST)

001: MIDTLYVAYF YPGMFHLFCR RHLGKSRTKR LVQFQYSYGC LSSHYGFLVK HYLAVQKEEE RPKEKERRKP RVIDEFMEEL KFEKELRQKR NQEREQWREG
101: RHTDTSASSS RFDELPDELD PIGKLPGSFD DGDPQTTNLY VGNLSPKVDE NFLMRTFGRF GPIASVKIMW PRTEEERRRQ RNCGFVAFMN RADGQAAKDE
201: MEGVVVYDYE LKLGWGKSVA LPSQALPAPP PGHMAIRNKE

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.