Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G137800.4 | Wheat | nucleus | 89.44 | 96.65 |
| TraesCS6A01G148500.2 | Wheat | nucleus | 89.24 | 96.44 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 90.31 | 92.19 |
| EES04635 | Sorghum | nucleus | 74.61 | 81.48 |
| Zm00001d015499_P003 | Maize | nucleus | 67.64 | 73.32 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 68.99 | 70.85 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 64.15 | 68.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.98 | 68.32 |
| Os02t0179900-01 | Rice | mitochondrion | 15.79 | 67.92 |
| KRH07572 | Soybean | nucleus | 56.88 | 67.16 |
| KRH45333 | Soybean | nucleus | 62.6 | 66.67 |
| Solyc03g025280.2.1 | Tomato | nucleus | 60.85 | 66.31 |
| CDX87103 | Canola | nucleus | 58.33 | 64.32 |
| Bra036530.1-P | Field mustard | nucleus | 58.04 | 64.06 |
| CDY19818 | Canola | nucleus | 57.85 | 63.85 |
| AT5G25060.1 | Thale cress | nucleus | 58.14 | 63.42 |
| KRH07573 | Soybean | nucleus | 5.04 | 60.47 |
| AT5G10800.1 | Thale cress | nucleus | 54.36 | 59.24 |
| CDX88153 | Canola | nucleus | 24.32 | 50.3 |
| Bra009812.1-P | Field mustard | nucleus | 22.29 | 48.94 |
| Bra009813.1-P | Field mustard | nucleus | 22.29 | 48.83 |
| CDY28356 | Canola | nucleus | 9.5 | 41.53 |
| PGSC0003DMT400082365 | Potato | cytosol | 5.14 | 41.41 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:1.25.40.90 | MapMan:16.4.1.2.10 | Gene3D:3.30.70.330 | UniProt:A0A287TR91 | InterPro:CID_dom |
| ncoils:Coil | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G029290 |
| EnsemblPlants:HORVU6Hr1G029290.9 | InterPro:IPR000061 | InterPro:IPR000504 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR012677 |
| InterPro:IPR035967 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF01805 | PFAM:PF08312 | PFscan:PS50102 |
| PFscan:PS50128 | PFscan:PS51391 | PANTHER:PTHR23140 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SMART:SM00582 | SMART:SM00648 | SMART:SM01115 | InterPro:SR140_RRM | SUPFAM:SSF109905 | SUPFAM:SSF48464 |
| SUPFAM:SSF54928 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI000B4737F2 | InterPro:mRNA_splic_Cwf21_dom | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:+:118995716..119004388
Molecular Weight (calculated)
115454.0 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.847
Length
1032 amino acids
Sequence
(BLAST)
(BLAST)
0001: CRSAPCSRVP DQYTPPLRCP RDPNLRGRLP TQAVAESSLR RRCEEAPEIS FPRRPAPNCP SVERTGDPSR RVLLSVASIV QMSSKKVPFN RHKENEEARK
0101: KREEDEAARV YAEFVKSFEG ESASGSKFVR GGVIDPNAKL RADSEAGGNS KDRGSVPKKG SRYVPSFLPP SFGREPEKKK EDERPKEKEK GKPRAIDTVM
0201: EELKLEKELR ERRNQERASR HGDTSVASSR FDELPDEFDP TGRLPGSFDD GDPQTTNLYV GNLSPKVDEN FLLRTFGRFG PIASVKIMWP RTEEERKRQR
0301: HCGFVAFMNR AEGQAAKDEM QGVVVYDYEL KIGWGKSVAL PSQALPAPPP GHMAIRNKEG GTVIISGPGG PPVASVTQQT SELVLTPNVP DIMVAPPDDS
0401: HLRHVIDTMA LHVLDGGCAF EQAIMERGRG KALFNFLFDL KSKEHTYYVW RLYSFAQGDT LQRWRTEPFI MITGSGRWVP PALPSSRSPD REKESTFAAG
0501: RTRRVEVERT LTEAQRDEFE DMLRALTLER SQIRVAMGFA LDNADAAGEI VEVLAESLTL KETPIPTKVA RLMLVSDILH NSSAPVKNAS AFRTKFEAAI
0601: PDVMESFNDL YCSITGRITA EALKERVLKV LQVWADWFLF SDAYLNGLKA TFLRPGNSGV TSFHSLCGDA PEIETKTSSE DNNGFRLDED GALATGKAAA
0701: TKELLGLPPA ELERRCRHNG LSLCGGKETM VARLLSLEEA EKEQVYQKDA AMKYVQSEPH RTGREDVGLN ARSVPRLGEG TGDSESDMLG LSCHSMQTGQ
0801: RRSRECASAE PEQVSSKKQR ADPVLPASKW NREDNDNDED RINGQGLGLS YSSGSDIAGD SGKVDTTEIS TDQAIHHPDT IVNEEHRQKL RQIEIAVMQY
0901: RDSLEEKGLH NMEEIERKVA SHRRRLQSDH GLSSIDGANN RRSSERLSLE RKERADDARD SSRKRPRSRS RSRSPSRKSS LDRDREYSRS RGRLHGNDAG
1001: RDRAREKSSG RGKDDHHDRS SRDREKDRRT GR
0101: KREEDEAARV YAEFVKSFEG ESASGSKFVR GGVIDPNAKL RADSEAGGNS KDRGSVPKKG SRYVPSFLPP SFGREPEKKK EDERPKEKEK GKPRAIDTVM
0201: EELKLEKELR ERRNQERASR HGDTSVASSR FDELPDEFDP TGRLPGSFDD GDPQTTNLYV GNLSPKVDEN FLLRTFGRFG PIASVKIMWP RTEEERKRQR
0301: HCGFVAFMNR AEGQAAKDEM QGVVVYDYEL KIGWGKSVAL PSQALPAPPP GHMAIRNKEG GTVIISGPGG PPVASVTQQT SELVLTPNVP DIMVAPPDDS
0401: HLRHVIDTMA LHVLDGGCAF EQAIMERGRG KALFNFLFDL KSKEHTYYVW RLYSFAQGDT LQRWRTEPFI MITGSGRWVP PALPSSRSPD REKESTFAAG
0501: RTRRVEVERT LTEAQRDEFE DMLRALTLER SQIRVAMGFA LDNADAAGEI VEVLAESLTL KETPIPTKVA RLMLVSDILH NSSAPVKNAS AFRTKFEAAI
0601: PDVMESFNDL YCSITGRITA EALKERVLKV LQVWADWFLF SDAYLNGLKA TFLRPGNSGV TSFHSLCGDA PEIETKTSSE DNNGFRLDED GALATGKAAA
0701: TKELLGLPPA ELERRCRHNG LSLCGGKETM VARLLSLEEA EKEQVYQKDA AMKYVQSEPH RTGREDVGLN ARSVPRLGEG TGDSESDMLG LSCHSMQTGQ
0801: RRSRECASAE PEQVSSKKQR ADPVLPASKW NREDNDNDED RINGQGLGLS YSSGSDIAGD SGKVDTTEIS TDQAIHHPDT IVNEEHRQKL RQIEIAVMQY
0901: RDSLEEKGLH NMEEIERKVA SHRRRLQSDH GLSSIDGANN RRSSERLSLE RKERADDARD SSRKRPRSRS RSRSPSRKSS LDRDREYSRS RGRLHGNDAG
1001: RDRAREKSSG RGKDDHHDRS SRDREKDRRT GR
001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
Arabidopsis Description
RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.