Factsheet for TraesCS6B01G176700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G137800.4	Wheat	nucleus	92.58	98.01
TraesCS6A01G148500.2	Wheat	nucleus	92.09	97.49
HORVU6Hr1G029290.9	Barley	nucleus, plastid	92.19	90.31
TraesCS1B01G193700.1	Wheat	nucleus	83.38	88.83
EES04635	Sorghum	nucleus	76.85	82.22
Zm00001d015499_P003	Maize	nucleus	69.44	73.74
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	71.12	71.54
VIT_04s0008g06810.t01	Wine grape	nucleus	65.68	68.88
GSMUA_AchrUn_...	Banana	nucleus	60.93	67.99
Os02t0179900-01	Rice	mitochondrion	16.02	67.5
KRH07572	Soybean	nucleus	58.26	67.39
KRH45333	Soybean	nucleus	64.0	66.77
Solyc03g025280.2.1	Tomato	nucleus	62.41	66.63
CDX87103	Canola	nucleus	59.74	64.53
Bra036530.1-P	Field mustard	nucleus	59.45	64.28
CDY19818	Canola	nucleus	59.25	64.06
AT5G25060.1	Thale cress	nucleus	59.64	63.74
AT5G10800.1	Thale cress	nucleus	55.79	59.56
KRH07573	Soybean	nucleus	5.04	59.3
CDX88153	Canola	nucleus	24.93	50.5
Bra009812.1-P	Field mustard	nucleus	22.95	49.36
Bra009813.1-P	Field mustard	nucleus	22.95	49.26
PGSC0003DMT400082365	Potato	cytosol	5.44	42.97
CDY28356	Canola	nucleus	9.69	41.53

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	InterPro:CID_dom	ncoils:Coil
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000504
InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR012677	InterPro:IPR035967	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800
PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360
SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464
SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	EnsemblPlantsGene:TraesCS6B01G176700	EnsemblPlants:TraesCS6B01G176700.1	TIGR:cd12223
InterPro:mRNA_splic_Cwf21_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:193466782..193474783

Molecular Weight (calculated)

113108.0 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.851

Length

1011 amino acids

Sequence
(BLAST)

0001: MPPSGPSLPL PWPTPDSGGR RILFAGAVEE APEIPFQPRR GAPPTTALAW SGADRRPVQA NIVQMSSKKV PFNRHKENEE ARKKREEDEA ARVYAEFVKS
0101: FEGESASGSK FVRGGVIDPN AKLRADSEGG NSKDRGSVPK KGSRYVPSFV PPSFGREPEK KKEDERPKEK EKGKPRAIDT VMEELKLEKE LRERRNQERA
0201: SRHGDTSMPS SRFDELPDEF DPTGRLPGSF DDGDPQTTNL YVGNLSPKVD ENFLLRTFGR FGPIASVKIM WPRTEEERKR QRHCGFVAFM NRAEGQAAKD
0301: EMQGVVVYDY ELKIGWGKSV ALPSQALPAP PPGHMAIRNK EGGTVIISGP GGPPVASVTQ QTSELVLTPN VPDIMVAPPD DSHLRHVIDT MALHVLDGGC
0401: AFEQAIMERG RGKTLFNFLF DLKSKEHTYY VWRLYSFAQG DTLQRWRTEP FIMITGSGRW VPPALPSSRS PDREKESTYA AGRTRRVEVE RTLTETQRDE
0501: FEDMLRALTL ERSQIRAAMG FALDNADAAG EIVEVLAESL TLKETPIPTK VARLMLVSDI LHNSSAPVKN ASAFRTKFEA AIPDVMESFN DLYCSITGRI
0601: TAEALKERVL KVLQVWADWF LFSDAYLNGL KATFLRPGNS GVTSFHSLCG DAPEIEKKTS SEDNNGFRLD EDGALATGKA AATKELLSLP LAELERRCRH
0701: NGLSLCGGKE MMVARLLSLE EAEKEQVYQK DVAMKYVQGE PHRAGREDVG LNARRLGDGT GDSESDMLGL SRHSMQTGQR RSRECVSAEP EQVSSKKQKA
0801: DPVLPASKWN REDNDNDEDR INGQGLGLSY SSGSDIAGDS GKVDTTEIST DQAIHHQDTI VDEEHRQKLR QIEIAVMQYR ESLEEKGLHS MEEIERKVAS
0901: HRRRLQSDYG LSSIDGANNR RSSERLSLER KERADDARDS SRKRPRSRSR SRSPSRKSSL DRDREHNRSR GRLHGNDAGR DRTREKGSGR GKDDHHDRSS
1001: RDREKDRRTG R

Best Arabidopsis Sequence Match ( AT5G10800.1 )
(BLAST)

001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR

Arabidopsis Description

Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.