CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45333	Soybean	nucleus	100.0	8.88
VIT_04s0008g06810.t01	Wine grape	nucleus	90.7	8.09
AT5G25060.1	Thale cress	nucleus	83.72	7.61
Bra036530.1-P	Field mustard	nucleus	81.4	7.49
CDY19818	Canola	nucleus	81.4	7.49
CDX87103	Canola	nucleus	81.4	7.48
Solyc03g025280.2.1	Tomato	nucleus	77.91	7.07
EES04635	Sorghum	nucleus	65.12	5.93
TraesCS1D01G190900.4	Wheat	nucleus	63.95	5.8
TraesCS1B01G193700.1	Wheat	nucleus	63.95	5.8
TraesCS1A01G185900.1	Wheat	nucleus	63.95	5.8
Zm00001d015499_P003	Maize	nucleus	63.95	5.78
CDX88153	Canola	nucleus	32.56	5.61
TraesCS6A01G148500.2	Wheat	nucleus	59.3	5.34
TraesCS6D01G137800.4	Wheat	nucleus	59.3	5.34
TraesCS6B01G176700.1	Wheat	nucleus	59.3	5.04
HORVU6Hr1G029290.9	Barley	nucleus, plastid	60.47	5.04
AT5G10800.1	Thale cress	nucleus	31.4	2.85
Os02t0179900-01	Rice	mitochondrion	3.49	1.25
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	12.79	1.09
Bra009812.1-P	Field mustard	nucleus	5.81	1.06
Bra009813.1-P	Field mustard	nucleus	5.81	1.06
GSMUA_AchrUn_...	Banana	nucleus	6.98	0.66
KRH07572	Soybean	nucleus	0.0	0.0
PGSC0003DMT400082365	Potato	cytosol	0.0	0.0
CDY28356	Canola	nucleus	0.0	0.0

Protein Annotations

EMBL:ACUP02010031	EnsemblPlants:KRH07573	EnsemblPlantsGene:GLYMA_16G095600	ncoils:Coil	PANTHER:PTHR23140	ProteinID:KRH07573
ProteinID:KRH07573.1	SEG:seg	UniParc:UPI00029684E0	UniProt:K7MG91	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr16:-:17008529..17012442

Molecular Weight (calculated)

9660.1 Da

IEP (calculated)

9.951

GRAVY (calculated)

-1.426

Length

86 amino acids

Sequence
(BLAST)

1: MSSFSITRKK TPFQKHREEE EAKKKRAEDE TARLYAEFVE SFQGDTTPGS KTFVRGGTIN PNDKFKDDSE GEKSKDGVSG PKKGSR

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.