Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07572 | Soybean | nucleus | 45.31 | 6.64 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 48.44 | 6.43 |
| AT5G25060.1 | Thale cress | nucleus | 45.31 | 6.13 |
| CDX87103 | Canola | nucleus | 44.53 | 6.09 |
| AT5G10800.1 | Thale cress | nucleus | 44.53 | 6.02 |
| Solyc03g025280.2.1 | Tomato | nucleus | 44.53 | 6.02 |
| Bra036530.1-P | Field mustard | nucleus | 43.75 | 5.99 |
| CDY19818 | Canola | nucleus | 43.75 | 5.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.19 | 5.96 |
| EES04635 | Sorghum | nucleus | 42.97 | 5.82 |
| KRH45333 | Soybean | nucleus | 43.75 | 5.78 |
| Zm00001d015499_P003 | Maize | nucleus | 42.97 | 5.78 |
| TraesCS6A01G148500.2 | Wheat | nucleus | 42.97 | 5.76 |
| TraesCS6D01G137800.4 | Wheat | nucleus | 42.19 | 5.65 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 40.62 | 5.48 |
| TraesCS1B01G193700.1 | Wheat | nucleus | 40.62 | 5.48 |
| TraesCS1D01G190900.4 | Wheat | nucleus | 40.62 | 5.48 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 42.97 | 5.47 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 42.97 | 5.44 |
| HORVU6Hr1G029290.9 | Barley | nucleus, plastid | 41.41 | 5.14 |
| CDX88153 | Canola | nucleus | 18.75 | 4.81 |
| CDY28356 | Canola | nucleus | 5.47 | 2.97 |
| Os02t0179900-01 | Rice | mitochondrion | 4.69 | 2.5 |
| Bra009812.1-P | Field mustard | nucleus | 7.03 | 1.91 |
| Bra009813.1-P | Field mustard | nucleus | 7.03 | 1.91 |
| KRH07573 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 |
| InterPro:IPR035967 | UniProt:M1D5T3 | PFAM:PF01805 | EnsemblPlantsGene:PGSC0003DMG400032500 | PGSC:PGSC0003DMG400032500 | EnsemblPlants:PGSC0003DMT400082365 |
| PANTHER:PTHR23140 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0002962831 |
Description
RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400032500]
Coordinates
chr11:+:35492669..35499979
Molecular Weight (calculated)
14340.5 Da
IEP (calculated)
4.827
GRAVY (calculated)
0.315
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTDLVHHCT TLGSTSDSSD EPDTLSIKKV LHADSMVVPP KDVIDTMALY VLDGGCAFER AIMDPLFNFF FELGSKKSTY YIWRLYSLPQ IRAPVIRVDS
101: EPIVEVFRGK GELLTSWICL PLFVIVVG
101: EPIVEVFRGK GELLTSWICL PLFVIVVG
001: MWPRTEEEKR RERHCGFVAF MNRADGEAAK EKMQGIIVYE YELKIGWGKV VFLPSQALPA PPPGHMAIRS KEGCNLIFSV TSGPPMNSVP NQNSELVLTP
101: NVPDITVISP EDEHLKQIID TMALNVLDGG CAFEQAIMER GRGNPLFNFL FELGSKEHTY YVWRLYSFAQ GDTLQRWRTE PYIMIAGSGR WIPPPLPATR
201: SPEHGKESRG TYAAGKSRCT EAEQTLTDSQ RDEFEDMLRA LTLERSQIRE AMGFALDNAE AAGEVVEVLT ESLTLKETSI PTKVARLMLV SDIIHNSSAR
301: VKNASAYRTK FEATLPDIME SFNDLYHSVH GRITAEALRV IPESKYSSYV VLYPLKFCSH SYFVQERVLK VLQVWADWFL FSDAYINGLR ATFLRSRNFG
401: VTSFHSICGD APDIEKKGLI GNMNDADKIN QDAALAMGEG AARQELMNRP ISELERRCRH NGLSLLGGRE MMVARLVCLK DAEKQRGYEV VDENAKYRQG
501: HSTWEEVNIE PKRMKTSYDK VETEEPVDLA STIPIPQPEL KAFVKKEKID LILPTSRWAR EDDETDDEQK KSYSSGSDNA GGITFKTDEE DLKADPSVRV
601: QPENEIDVEQ RQKLRHIEIA LIEYRESLEE QGMKNSEEIE RKVAIHRKRL EADGLSGNQR VLPEKREKRE DSRDSSRKRN RSESQNRSQS PPQKSLTRER
701: VRDHDLDKDR HRDRDRQQHD LDKDRKRRAK SSSRERDDHD RSRERDRDWR RRGMR
101: NVPDITVISP EDEHLKQIID TMALNVLDGG CAFEQAIMER GRGNPLFNFL FELGSKEHTY YVWRLYSFAQ GDTLQRWRTE PYIMIAGSGR WIPPPLPATR
201: SPEHGKESRG TYAAGKSRCT EAEQTLTDSQ RDEFEDMLRA LTLERSQIRE AMGFALDNAE AAGEVVEVLT ESLTLKETSI PTKVARLMLV SDIIHNSSAR
301: VKNASAYRTK FEATLPDIME SFNDLYHSVH GRITAEALRV IPESKYSSYV VLYPLKFCSH SYFVQERVLK VLQVWADWFL FSDAYINGLR ATFLRSRNFG
401: VTSFHSICGD APDIEKKGLI GNMNDADKIN QDAALAMGEG AARQELMNRP ISELERRCRH NGLSLLGGRE MMVARLVCLK DAEKQRGYEV VDENAKYRQG
501: HSTWEEVNIE PKRMKTSYDK VETEEPVDLA STIPIPQPEL KAFVKKEKID LILPTSRWAR EDDETDDEQK KSYSSGSDNA GGITFKTDEE DLKADPSVRV
601: QPENEIDVEQ RQKLRHIEIA LIEYRESLEE QGMKNSEEIE RKVAIHRKRL EADGLSGNQR VLPEKREKRE DSRDSSRKRN RSESQNRSQS PPQKSLTRER
701: VRDHDLDKDR HRDRDRQQHD LDKDRKRRAK SSSRERDDHD RSRERDRDWR RRGMR
Arabidopsis Description
Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.