Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G193700.1 | Wheat | nucleus | 98.31 | 98.31 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 97.79 | 97.79 |
| TraesCS6D01G137800.4 | Wheat | nucleus | 88.2 | 87.64 |
| EES04635 | Sorghum | nucleus | 82.61 | 82.96 |
| Zm00001d015499_P003 | Maize | nucleus | 75.66 | 75.42 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 77.13 | 72.84 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 71.23 | 70.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.28 | 69.43 |
| KRH45333 | Soybean | nucleus | 69.55 | 68.11 |
| KRH07572 | Soybean | nucleus | 62.7 | 68.08 |
| Os02t0179900-01 | Rice | mitochondrion | 17.07 | 67.5 |
| Solyc03g025280.2.1 | Tomato | nucleus | 67.23 | 67.37 |
| CDX87103 | Canola | nucleus | 64.81 | 65.71 |
| Bra036530.1-P | Field mustard | nucleus | 64.59 | 65.56 |
| CDY19818 | Canola | nucleus | 64.38 | 65.35 |
| AT5G25060.1 | Thale cress | nucleus | 64.28 | 64.48 |
| KRH07573 | Soybean | nucleus | 5.8 | 63.95 |
| AT5G10800.1 | Thale cress | nucleus | 60.48 | 60.61 |
| CDX88153 | Canola | nucleus | 27.29 | 51.9 |
| Bra009812.1-P | Field mustard | nucleus | 25.08 | 50.64 |
| Bra009813.1-P | Field mustard | nucleus | 25.08 | 50.53 |
| CDY28356 | Canola | nucleus | 10.64 | 42.8 |
| PGSC0003DMT400082365 | Potato | cytosol | 5.48 | 40.62 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:1.25.40.90 | MapMan:16.4.1.2.10 | Gene3D:3.30.70.330 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR000504 |
| InterPro:IPR003034 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR012677 | InterPro:IPR035967 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF01805 | PFAM:PF08312 | PFscan:PS50102 | PFscan:PS50128 | PFscan:PS50800 |
| PFscan:PS51391 | PANTHER:PTHR23140 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SAP_dom | SMART:SM00360 |
| SMART:SM00582 | SMART:SM00648 | SMART:SM01115 | InterPro:SR140_RRM | SUPFAM:SSF109905 | SUPFAM:SSF48464 |
| SUPFAM:SSF54928 | InterPro:SWAP/Surp_sf | InterPro:Surp | EnsemblPlantsGene:TraesCS1D01G190900 | EnsemblPlants:TraesCS1D01G190900.4 | TIGR:cd12223 |
| InterPro:mRNA_splic_Cwf21_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:262706397..262715358
Molecular Weight (calculated)
106362.0 Da
IEP (calculated)
7.331
GRAVY (calculated)
-0.899
Length
949 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKVPFNR HKENEEARKK REEDEAARVY AEFVESFKGE STSGSKFVRG GVIDPNAKLR ADSEGGKSKD GWSVPKKGSR YVPSFLPPPF GKEPDKKKGD
101: ERPKEKEKGK PRAIDKFMEE LKFEQELRER RNQERDGRHG DTSTSSSHFD ELPDEFDPSG RIPGSFDDGD PQTTNLYVGN LSPQVDENFL LRTFGRFGPI
201: ASVKIMWPRT EEERRRQRNC GFVAFMNRAE GQAAKDEMQG VIVYDYELKI GWGKSVALPS QALPAPPPGH MAIRNKEGGT VIISGPGGPP VASVTRQTSE
301: LVLTPNVPDI VVAPPDDSHL RHVIDTMALH VLDGGCAFEQ AIMERGRGNS LFSFLFDLKS KEHTYYVWRL YSFAQGDTLQ RWRTEPFIMI TGSARWVPPA
401: LPSSRSPNHE KESTFAAGRS RRAEVERTLT DSQRDEFEDM LRALTLERSQ IKEAMGFALD NADAAGEIVE VLAESLTLKE TSIPTKVARL MLVSDILHNS
501: SAPVKNASAF RTKFEAAIPD VMESFNDLYR SITGRITAEA LKERVLKVLQ VWADWFLFSD AYLNGLKATF LRPGNSGVIP FHSLCGDAPE IEKKTSSEDG
601: NNGFRLDEDG ALATGKAAAT KELLGLPLAE LERRCRHNGL SLCGGKEMMV ARLLSLEEAE KERVYQKDVD MKYGQGEPHR SGREDIGLNA HGASRPAEGT
701: VDDESDMLGL SRHTGQKYYG KSASAEPKQV PSKKQRADPI LPASKWNRED DGSGDEDRKD GQGLGLSYSS GSDIAGDPGK ADATEISTDH AIHHPDTIVD
801: EEHRQKLRQI EIGVMQYRES LEEKGLWNME ELERKVASHR RRLQSEYGLS SSVDGANNRR SSERIPSDRK GRYDDARDSS KKRPHSPSRS HSPSKKLSLD
901: RDREHNRSRD RLHGNDVGRD RAREKSSGRE KDDHHDRSRE REKDRRKGR
101: ERPKEKEKGK PRAIDKFMEE LKFEQELRER RNQERDGRHG DTSTSSSHFD ELPDEFDPSG RIPGSFDDGD PQTTNLYVGN LSPQVDENFL LRTFGRFGPI
201: ASVKIMWPRT EEERRRQRNC GFVAFMNRAE GQAAKDEMQG VIVYDYELKI GWGKSVALPS QALPAPPPGH MAIRNKEGGT VIISGPGGPP VASVTRQTSE
301: LVLTPNVPDI VVAPPDDSHL RHVIDTMALH VLDGGCAFEQ AIMERGRGNS LFSFLFDLKS KEHTYYVWRL YSFAQGDTLQ RWRTEPFIMI TGSARWVPPA
401: LPSSRSPNHE KESTFAAGRS RRAEVERTLT DSQRDEFEDM LRALTLERSQ IKEAMGFALD NADAAGEIVE VLAESLTLKE TSIPTKVARL MLVSDILHNS
501: SAPVKNASAF RTKFEAAIPD VMESFNDLYR SITGRITAEA LKERVLKVLQ VWADWFLFSD AYLNGLKATF LRPGNSGVIP FHSLCGDAPE IEKKTSSEDG
601: NNGFRLDEDG ALATGKAAAT KELLGLPLAE LERRCRHNGL SLCGGKEMMV ARLLSLEEAE KERVYQKDVD MKYGQGEPHR SGREDIGLNA HGASRPAEGT
701: VDDESDMLGL SRHTGQKYYG KSASAEPKQV PSKKQRADPI LPASKWNRED DGSGDEDRKD GQGLGLSYSS GSDIAGDPGK ADATEISTDH AIHHPDTIVD
801: EEHRQKLRQI EIGVMQYRES LEEKGLWNME ELERKVASHR RRLQSEYGLS SSVDGANNRR SSERIPSDRK GRYDDARDSS KKRPHSPSRS HSPSKKLSLD
901: RDREHNRSRD RLHGNDVGRD RAREKSSGRE KDDHHDRSRE REKDRRKGR
001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR
Arabidopsis Description
RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.