Factsheet for AT5G25060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036530.1-P	Field mustard	nucleus	88.06	89.09
CDY19818	Canola	nucleus	88.06	89.09
CDX87103	Canola	nucleus	87.31	88.25
KRH07573	Soybean	nucleus	7.61	83.72
CDY28356	Canola	nucleus	19.77	79.24
AT5G10800.1	Thale cress	nucleus	73.57	73.5
Bra009812.1-P	Field mustard	nucleus	36.15	72.77
VIT_04s0008g06810.t01	Wine grape	nucleus	74.0	72.61
Bra009813.1-P	Field mustard	nucleus	36.15	72.61
CDX88153	Canola	nucleus	38.05	72.14
KRH45333	Soybean	nucleus	72.94	71.21
Solyc03g025280.2.1	Tomato	nucleus	70.3	70.22
KRH07572	Soybean	nucleus	64.48	69.79
EES04635	Sorghum	nucleus	65.54	65.61
TraesCS1A01G185900.1	Wheat	nucleus	64.8	64.59
GSMUA_AchrUn_...	Banana	nucleus	61.84	64.57
TraesCS1D01G190900.4	Wheat	nucleus	64.48	64.28
TraesCS1B01G193700.1	Wheat	nucleus	64.38	64.17
TraesCS6A01G148500.2	Wheat	nucleus	63.53	62.93
TraesCS6D01G137800.4	Wheat	nucleus	63.42	62.83
Os02t0179900-01	Rice	mitochondrion	15.54	61.25
Zm00001d015499_P003	Maize	nucleus	61.21	60.82
TraesCS6B01G176700.1	Wheat	nucleus	63.74	59.64
HORVU6Hr1G029290.9	Barley	nucleus, plastid	63.42	58.14
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	60.57	57.01
PGSC0003DMT400082365	Potato	cytosol	6.13	45.31

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	PDB:2E62	Gene3D:3.30.70.330	EntrezGene:832577
EMBL:AC005964	ProteinID:AED93395.1	EMBL:AF360212	ArrayExpress:AT5G25060	EnsemblPlantsGene:AT5G25060	RefSeq:AT5G25060
TAIR:AT5G25060	RefSeq:AT5G25060-TAIR-G	EnsemblPlants:AT5G25060.1	TAIR:AT5G25060.1	EMBL:AY040060	InterPro:CID_dom
ncoils:Coil	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
GO:GO:0016607	InterPro:IPR000061	InterPro:IPR000504	InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942
InterPro:IPR012677	InterPro:IPR035967	RefSeq:NP_568464.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01805
PFAM:PF08312	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800	PFscan:PS51391
PANTHER:PTHR23140	UniProt:Q9C5J3	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360
SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464
SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI00000A5215	InterPro:mRNA_splic_Cwf21_dom	SEG:seg

Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]

Coordinates

chr5:-:8633114..8640217

Molecular Weight (calculated)

108292.0 Da

IEP (calculated)

6.589

GRAVY (calculated)

-1.021

Length

946 amino acids

Sequence
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.