CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036530.1-P	Field mustard	nucleus	99.79	99.79
CDX87103	Canola	nucleus	97.33	97.22
CDY28356	Canola	nucleus	23.96	94.92
AT5G25060.1	Thale cress	nucleus	89.09	88.06
KRH07573	Soybean	nucleus	7.49	81.4
CDX88153	Canola	nucleus	38.5	72.14
VIT_04s0008g06810.t01	Wine grape	nucleus	73.48	71.27
KRH45333	Soybean	nucleus	72.41	69.87
KRH07572	Soybean	nucleus	64.06	68.54
Solyc03g025280.2.1	Tomato	nucleus	69.09	68.22
EES04635	Sorghum	nucleus	65.35	64.66
TraesCS1A01G185900.1	Wheat	nucleus	65.35	64.38
TraesCS1D01G190900.4	Wheat	nucleus	65.35	64.38
TraesCS1B01G193700.1	Wheat	nucleus	65.13	64.17
GSMUA_AchrUn_...	Banana	nucleus	60.96	62.91
TraesCS6A01G148500.2	Wheat	nucleus	63.96	62.62
TraesCS6D01G137800.4	Wheat	nucleus	63.85	62.51
Os02t0179900-01	Rice	mitochondrion	15.62	60.83
Zm00001d015499_P003	Maize	nucleus	60.75	59.66
TraesCS6B01G176700.1	Wheat	nucleus	64.06	59.25
HORVU6Hr1G029290.9	Barley	nucleus, plastid	63.85	57.85
Zm00001d015495_P013	Maize	endoplasmic reticulum, extracellular	60.43	56.22
PGSC0003DMT400082365	Potato	cytosol	5.99	43.75

Protein Annotations

Gene3D:1.10.10.790	Gene3D:1.25.40.90	MapMan:16.4.1.2.10	Gene3D:3.30.70.330	GO:A0A078G516	UniProt:A0A078G516
EnsemblPlants:CDY19818	ProteinID:CDY19818	ProteinID:CDY19818.1	InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00009577001	InterPro:IPR000061	InterPro:IPR000504
InterPro:IPR003034	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR012677	InterPro:IPR035967	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF01805	PFAM:PF08312	PFscan:PS50102	PFscan:PS50128	PFscan:PS50800
PFscan:PS51391	PANTHER:PTHR23140	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SAP_dom	SMART:SM00360
SMART:SM00582	SMART:SM00648	SMART:SM01115	InterPro:SR140_RRM	SUPFAM:SSF109905	SUPFAM:SSF48464
SUPFAM:SSF54928	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0004EF087A	InterPro:mRNA_splic_Cwf21_dom	SEG:seg

Description

BnaA09g04710DBnaA09g04710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G516]

Coordinates

chrLK032100:+:513107..518943

Molecular Weight (calculated)

106867.0 Da

IEP (calculated)

5.920

GRAVY (calculated)

-0.976

Length

935 amino acids

Sequence
(BLAST)

001: MSSFSITRKK TPFQKHKEEE EARKKKAEDE TARLYQEFVE SFQGESGTKT FVRGGTINPG DKPKADSEGE KSKDGGSVSK KGSRYVPSFL PPPMASKGKE
101: TERKREEERP KERDKGKTRN IDNFMEELKR EQEMRERRNQ DRDRQGDSSP TSRFDELDDF DPTGRLGSFD DGDPQTTNLY VGNLSPKVDE NFLLRTFGRF
201: GPIASVKIMW PRTDEEKRRQ RNCGFVSFMH RADGQAAKDE MQGIIVYDYE LKIGWGKAVS LPSQALPAPP PGHMAIRSKE GCNLIFSGQS GPPIITSVPT
301: QNSELVLTPN VPDITVVTPE NEHLRHLIDT MALYVLDGEC AFEQAIMERG RGNPLFSFLF ELGSKEHTYY VWRLYSFAQG DTLQRWRTEP YIMITGSGRW
401: IPPPLPVNKS LEHDKESAST YAAGRSRRAE VERPLTDPQR DDFEDMLRAL TLERSLIKEA MGFALDNADA AGEVVEVLTE SLTLKETSIP TKVARLMLVS
501: DILHNSSAPV KNASAYRTKF EATLPDIMES FNDLYRSITG RITAEALKER VLKVLQVWAD WFLFSDAYIS GLRTTFLRSG ISGVTSFHSI CGDAPEIEKK
601: GYNDMSDIGY PDSALAIGKE GARQELMDLP ISELERRCRH NGLSLVGGRV VMVARLLSLE DTEKQRGYEV VDEISKYPQQ DHSTWEEVRN VTEVEMKEPM
701: NLATTIPIPQ PELKAFVGTE KSDLLLTASK WAKEDDEADD EQNKSYSPGS DNTGGITFKA DDEDLKSNDR VRAQPDNGMD EEQRQKRRRI EVALIEYRET
801: LEEQGMKNSE EIEKKVEIKR KRLEVDYGLS GSNEGSKNQK STVERKERPT EDSRESSKKR QRGENQSQSP PRKSSTRERD HDLDRDRDRG RLRDRDRQHD
901: LSRDRDRREK SLSHERDDHD KSRERDREWR RRGTR

Best Arabidopsis Sequence Match ( AT5G25060.1 )
(BLAST)

001: MSSFSITRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDNATTK TFVRGGTINP GDKPKVDSEG EKSKDGGSVS KKGSRYVPSF LPPPLASKGK
101: EPEKKREEER PREREKGKTR NIDNFMEELK REQEMRERRN QDRDRQGDSS PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
201: RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPIITSV
301: PNQNSELVLT PNVPDITVVT PEDEHLRHVI DTLALYVLDG ECAFEQAIME RGRGNPLFKF MFELGSKEHT YYVWRLYSFA QGDTLQRWRT EPYIMITGSG
401: RWIPPPLPVT RTQEHEKESA STYAAGRTRR AEVERTLTDP QRDEFEDMLR ALTLERSQIK EAMGFALDNA DAAGEVVEVL TESLTLKETS IPTKVARLML
501: VSDILHNSSA RVKNASAYRT KFEATLPDIM ESFNDLYRSI TGRITAEALK ERVLKVLQVW ADWFLFSDAY IYGLRSTFLR SGVSGVTSFH SICGDAPEIE
601: NKSYADNMSD IGKINPDAAL AIGKGAARQE LMNLPIAELE RRCRHNGLSL VGGRVMMVTR LLSLEDTEKQ RGYEAVDEIP KHPQNHSTWE EVKSEREHIK
701: NSYAEVEMKE PVNLPTTIPI PQPELKAFVG KEKNELILPA SKWARDDDEA DDEQKRSSSS GSDNTGGITF KADGEDLKGN DCVRAQPDNG MDEEQRQKRR
801: RIEVALIEYR ETLEEQGMKN PEEIERKVEI NRKRLEVDYG LSGPNEGNRN QKSIIERKEK REDSQESSKK RHRGENKSQS PPRKSSTRER DHDLGRDRDR
901: ERHRDRDRQH DLNRDRDRRE KSSSHDRDDN DRSKERDRDW RRRGTR

Arabidopsis Description

RRC1Protein RRC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.