Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04635 | Sorghum | nucleus | 83.4 | 84.02 |
| Zm00001d015495_P013 | Maize | endoplasmic reticulum, extracellular | 81.09 | 76.82 |
| TraesCS1B01G193700.1 | Wheat | nucleus | 75.53 | 75.76 |
| TraesCS1D01G190900.4 | Wheat | nucleus | 75.42 | 75.66 |
| TraesCS1A01G185900.1 | Wheat | nucleus | 75.32 | 75.55 |
| TraesCS6D01G137800.4 | Wheat | nucleus | 73.42 | 73.19 |
| TraesCS6A01G148500.2 | Wheat | nucleus | 73.11 | 72.88 |
| TraesCS6B01G176700.1 | Wheat | nucleus | 73.74 | 69.44 |
| Os02t0179900-01 | Rice | mitochondrion | 17.23 | 68.33 |
| HORVU6Hr1G029290.9 | Barley | nucleus, plastid | 73.32 | 67.64 |
| VIT_04s0008g06810.t01 | Wine grape | nucleus | 66.6 | 65.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.34 | 64.46 |
| KRH07573 | Soybean | nucleus | 5.78 | 63.95 |
| KRH45333 | Soybean | nucleus | 64.29 | 63.16 |
| KRH07572 | Soybean | nucleus | 57.98 | 63.16 |
| Solyc03g025280.2.1 | Tomato | nucleus | 62.5 | 62.83 |
| AT5G25060.1 | Thale cress | nucleus | 60.82 | 61.21 |
| CDX87103 | Canola | nucleus | 60.08 | 61.11 |
| Bra036530.1-P | Field mustard | nucleus | 59.77 | 60.86 |
| CDY19818 | Canola | nucleus | 59.66 | 60.75 |
| AT5G10800.1 | Thale cress | nucleus | 56.62 | 56.92 |
| CDX88153 | Canola | nucleus | 24.58 | 46.89 |
| Bra009812.1-P | Field mustard | nucleus | 21.85 | 44.26 |
| Bra009813.1-P | Field mustard | nucleus | 21.85 | 44.16 |
| PGSC0003DMT400082365 | Potato | cytosol | 5.78 | 42.97 |
| CDY28356 | Canola | nucleus | 5.99 | 24.15 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:1.25.40.90 | EntrezGene:103626713 | MapMan:16.4.1.2.10 | Gene3D:3.30.70.330 | UniProt:A0A1D6H2G7 |
| ProteinID:AQK69055.1 | InterPro:CID_dom | ncoils:Coil | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR000504 | InterPro:IPR003034 | InterPro:IPR006569 | InterPro:IPR008942 |
| InterPro:IPR012677 | InterPro:IPR035967 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF01805 | PFAM:PF08312 |
| PFscan:PS50102 | PFscan:PS50128 | PFscan:PS50800 | PFscan:PS51391 | PANTHER:PTHR23140 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:SAP_dom | SMART:SM00360 | SMART:SM00582 | SMART:SM00648 | SMART:SM01115 |
| InterPro:SR140_RRM | SUPFAM:SSF109905 | SUPFAM:SSF48464 | SUPFAM:SSF54928 | InterPro:SWAP/Surp_sf | InterPro:Surp |
| UniParc:UPI0008431C59 | EnsemblPlantsGene:Zm00001d015499 | EnsemblPlants:Zm00001d015499_P003 | EnsemblPlants:Zm00001d015499_T003 | InterPro:mRNA_splic_Cwf21_dom | SEG:seg |
Description
Protein RRC1
Coordinates
chr5:+:93927355..93959494
Molecular Weight (calculated)
106048.0 Da
IEP (calculated)
7.567
GRAVY (calculated)
-0.716
Length
952 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKVPYHK HREAEEARKK REEDEAARVY AEFVESFKGD SSSGAKFIRG GVIDPNAKLK TDSEGGKSKD GGSVPKKGSS ILFSRYVPSF LPPSFAKEPE
101: KKKEGERPKE KEKEKGKPRV IDRFLEEIKL EQEQREKRHQ DRDHRREGRH GDSSMSSSRF DELPDEFDPT GRFPGSFDDG DPQTTNLYVG NLSPKVDENF
201: LLRTFGRFGP IASVKIMWPR TEEERRRQRN CGFVAFMNRT DGQAAKDEMQ GVIVYDYELK IGWGKSVALP SQALPAPPPG HMAIRNKEGG TATVILSGPG
301: GPAVASIKPQ TSELVLTPNV PDIVVAPPDD GHLRHVIDTM ALHVLDGGCA FEQAVMERGR GNPLFDFLFN LKSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMITGSGRWV PPPLSSNRSP EREKESTFAA GRSRRVEVER TLTDSQRDEF EDMLRALTLE RSQIKDAMGF ALDNADAAGE IVEVLTESLT LKETSIPTKV
501: ARLMLVSDIL HNSSAPVKNA SAFRTKFEAS LPDVMESFND LYRSITGRIT AEALKERVMK VLQVWADWFL FSDAFLNGLR ATFLRSGNSG VVPFHSLCGD
601: APEIEKKGSS EDGNDGFKLN EDGALATGKA AATKELLGLP LAELERRCRH NGLSLCGGKE MMVARLLNLE EAEKERIYEK DVDVKYVQGE QHVVGREDSG
701: VNAHSTSRFG EGSNGDELDV SRNSMRAGKG RSGGSASAEL ESFPSKKPKY DPVLPASKWS REDDISDDED RKGGRGLGLS YSQKLRQIEI SVMQYRESLE
801: EQGLRDLDEI ERKVASHRRR LQSEYGLSTP TDGANSRRSS GTHFKQYSIL QKEHHRRRSG KRGMAMHMII LGNVAGARVE AAVLQGSLRR GIESTIAVGT
901: EIGYARKVQA EGETTTTTEA EIERTGERGG DRPEKPRHYA PFALTEGPRS II
101: KKKEGERPKE KEKEKGKPRV IDRFLEEIKL EQEQREKRHQ DRDHRREGRH GDSSMSSSRF DELPDEFDPT GRFPGSFDDG DPQTTNLYVG NLSPKVDENF
201: LLRTFGRFGP IASVKIMWPR TEEERRRQRN CGFVAFMNRT DGQAAKDEMQ GVIVYDYELK IGWGKSVALP SQALPAPPPG HMAIRNKEGG TATVILSGPG
301: GPAVASIKPQ TSELVLTPNV PDIVVAPPDD GHLRHVIDTM ALHVLDGGCA FEQAVMERGR GNPLFDFLFN LKSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMITGSGRWV PPPLSSNRSP EREKESTFAA GRSRRVEVER TLTDSQRDEF EDMLRALTLE RSQIKDAMGF ALDNADAAGE IVEVLTESLT LKETSIPTKV
501: ARLMLVSDIL HNSSAPVKNA SAFRTKFEAS LPDVMESFND LYRSITGRIT AEALKERVMK VLQVWADWFL FSDAFLNGLR ATFLRSGNSG VVPFHSLCGD
601: APEIEKKGSS EDGNDGFKLN EDGALATGKA AATKELLGLP LAELERRCRH NGLSLCGGKE MMVARLLNLE EAEKERIYEK DVDVKYVQGE QHVVGREDSG
701: VNAHSTSRFG EGSNGDELDV SRNSMRAGKG RSGGSASAEL ESFPSKKPKY DPVLPASKWS REDDISDDED RKGGRGLGLS YSQKLRQIEI SVMQYRESLE
801: EQGLRDLDEI ERKVASHRRR LQSEYGLSTP TDGANSRRSS GTHFKQYSIL QKEHHRRRSG KRGMAMHMII LGNVAGARVE AAVLQGSLRR GIESTIAVGT
901: EIGYARKVQA EGETTTTTEA EIERTGERGG DRPEKPRHYA PFALTEGPRS II
001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
Arabidopsis Description
Protein RRC1-like [Source:UniProtKB/Swiss-Prot;Acc:F4KIA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.