Factsheet for Bra001768.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82270	Canola	cytosol	97.89	92.98
Bra035834.1-P	Field mustard	cytosol	93.93	92.62
AT3G19960.2	Thale cress	cytosol, plastid	90.32	87.24
Bra018844.1-P	Field mustard	cytosol	84.86	83.68
Bra039641.1-P	Field mustard	cytosol	82.04	81.18
VIT_10s0071g00210.t01	Wine grape	plastid	79.84	76.86
KRG90612	Soybean	cytosol	79.14	76.84
KRH36145	Soybean	cytosol	79.14	76.45
Solyc02g020910.2.1	Tomato	nucleus	77.2	75.8
KRG89103	Soybean	cytosol	78.08	75.43
KRH40907	Soybean	cytosol	77.11	74.87
Os10t0488800-01	Rice	cytosol	60.3	72.11
HORVU1Hr1G043440.4	Barley	cytosol	67.08	67.49
Zm00001d013967_P004	Maize	mitochondrion	70.25	66.83
EER94044	Sorghum	mitochondrion	69.63	66.14
Zm00001d032637_P004	Maize	mitochondrion	69.28	66.08
GSMUA_Achr1P01870_001	Banana	cytosol	73.42	65.77
TraesCS1D01G159600.1	Wheat	mitochondrion	67.61	64.48
TraesCS1B01G179500.2	Wheat	mitochondrion	67.61	64.32
TraesCS1A01G162800.1	Wheat	mitochondrion	67.78	64.27
GSMUA_Achr2P10680_001	Banana	cytosol	67.61	60.86
Bra022708.1-P	Field mustard	cytosol	55.37	51.94
Bra002998.1-P	Field mustard	cytosol, plastid	55.02	51.87
Bra031394.1-P	Field mustard	cytosol	29.14	48.96
Bra026355.1-P	Field mustard	cytosol	49.12	44.86
Bra014582.1-P	Field mustard	cytosol	30.9	29.87
Bra003324.1-P	Field mustard	cytosol	30.11	27.76
Bra027512.1-P	Field mustard	cytosol	29.4	27.15
Bra011053.1-P	Field mustard	cytosol	35.04	26.43
Bra036688.1-P	Field mustard	cytosol	33.45	26.3
Bra032526.1-P	Field mustard	cytosol	34.6	26.13
Bra030993.1-P	Field mustard	cytosol	34.68	26.09
Bra020105.1-P	Field mustard	cytosol	34.95	26.0
Bra006561.1-P	Field mustard	cytosol	34.68	25.63
Bra036460.1-P	Field mustard	cytosol	33.45	25.54
Bra027968.1-P	Field mustard	cytosol	33.98	25.41
Bra011426.1-P	Field mustard	cytosol	33.89	25.38
Bra037016.1-P	Field mustard	cytosol	32.92	24.83
Bra033704.1-P	Field mustard	cytosol, plastid	35.39	24.25
Bra030739.1-P	Field mustard	cytosol	32.13	23.5
Bra018605.1-P	Field mustard	cytosol	34.24	22.04
Bra030576.1-P	Field mustard	cytosol	31.07	20.88
Bra022871.1-P	Field mustard	cytosol	33.45	17.2
Bra002304.1-P	Field mustard	cytosol	2.82	7.34

Protein Annotations

Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	Gene3D:2.30.30.360	MapMan:20.2.4.2	Gene3D:3.30.70.3240
Gene3D:3.40.850.10	EnsemblPlantsGene:Bra001768	EnsemblPlants:Bra001768.1	EnsemblPlants:Bra001768.1-P	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016459	GO:GO:0016787
GO:GO:0051015	InterPro:IPR000048	InterPro:IPR001609	InterPro:IPR004009	InterPro:IPR008989	InterPro:IPR036961
InterPro:IQ_motif_EF-hand-BS	InterPro:Kinesin_motor_dom_sf	UniProt:M4CC38	InterPro:MYSc_Myo8	InterPro:Myosin_N	InterPro:Myosin_S1_N
InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase	PFAM:PF00063	PFAM:PF00612	PRINTS:PR00193	PFscan:PS50096
PFscan:PS51456	PFscan:PS51844	PANTHER:PTHR13140	PANTHER:PTHR13140:SF685	SMART:SM00015	SMART:SM00242
SUPFAM:SSF52540	UniParc:UPI0002540562	SEG:seg	:	:	:

Description

AT3G19960 (E=0.0) ATM1 | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1); motor

Coordinates

chrA03:+:18337285..18343576

Molecular Weight (calculated)

128242.0 Da

IEP (calculated)

8.605

GRAVY (calculated)

-0.448

Length

1136 amino acids

Sequence
(BLAST)

0001: MSQKVTPSMN SLKSLPADYR FDGSSVPRKG GLRNGISPSD TAAGDSEESP YSGHVEHQSL SDDMDTDAAA TMPLPQSDER RWSDTSAYAR KKILQSWIQL
0101: PNGNWELGKI LSTSGEESVL SLAEGKVIKV MSETLVPANP DILDGVDDLM QLSYLNEPSV LYNLNYRYNQ DMIYTKAGPV LVAVNPFKEV PLYGSSYIEA
0201: YRKRSNDSPH VYAIADTAIR EMIRDEVNQS IIISGESGAG KTETAKIAMQ YLAALGGGSG IEYEILKTNP ILEAFGNAKT LRNDNSSRFG KLIEIYFSET
0301: GKISGAQVQT FLLEKSRVVQ CAEGERSYHI FYQLCAGASP ALREKLNLTS AHEYKYLRQS NCYSISGVDD AERFHTVKEA LDIVHVSKED QESVFAMLAA
0401: VLWLGNVSFT VIDNENHVEP VADESLSTVA KLIGCNSNDL KLSLSKRNMR VGKDTIVQKL TLPQAIDARD ALAKSIYSCL FDWLVEQINK SLAVGKRRTG
0501: RSISILDIYG FESFNKNSFE QFCINYANER LQQHFNRHLF KLEQEEYIQD GIDWTRVDFE DNQDCLSLFE KKPLGLLSLL DEESTFPNGT DLTLANKLKQ
0601: HLLSNSCFRG AREKLFTVVH YAGEVTYETT GFLEKNRDLL HLDSIQLLSS CSCHLPQAFA SSMLIQSEKP VVGPLYKAGG ADSQRLSVAT KFKGQLFQLM
0701: QRLGNTTPHF IRCIKPNNVQ SPGLYEQGLV LQQLRCCGVL EVVRISRSGF PTRMSHQKFA RRYCFLLVEN IADKDPLSVS VAILHQFNIL PEMYQVGYTK
0801: LFFRTGQIGV LEDTRNRTLH GILRVQSSFR GYKARCHLKE LRMGIYTLQS FVRGEKVRKE FAYLRKRHRA AATIQSQVKS KIARKQYQDV TEASLVIQSA
0901: IRGWLVRRCS GDIGWLKSGE VLVKASVLSE LQRRVLKSEA ALREKEEEND ILQQRLQQYE NRWSEYETKM KSMEEIWQKQ MRSLQSSLSI AKKSLAVEDS
1001: ARNSDASVNA SDATDWDSSS NQFKGGGGRQ QQQQRPMSAG LSVIGRLAEE FEQRAQVFGD DAKFLVEVKS GQVEANLNPD RELRRLKQMF ETWKKDYGGR
1101: LRETKMILSK LGSEESGGSM EKVKRKWWGR RNSTRY

Best Arabidopsis Sequence Match ( AT3G19960.5 )
(BLAST)

0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE
0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP
0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIISGESGA GKTETAKIAM QYLAALGGGS GIEYEILKTN PILEAFGNAK
0301: TLRNDNSSRF GKLIEIHFSE SGKISGAQIQ TFLLEKSRVV QCAEGERSYH IFYQLCAGAS PALREKLNLT SAHEYKYLGQ SNCYSINGVD DAERFHTVKE
0401: ALDIVHVSKE DQESVFAMLA AVLWLGNVSF TVIDNENHVE PVADESLSTV AKLIGCNINE LTLTLSKRNM RVRNDTIVQK LTLPQAIDAR DALAKSIYSC
0501: LFDWLVEQIN KSLAVGKRRT GRSISILDIY GFESFDKNSF EQFCINYANE RLQQHFNRHL FKLEQEEYIQ DGIDWTRVDF EDNQNCLSLF EKKPLGLLSL
0601: LDEESTFPNG TDLTLANKLK QHLQSNSCFR GDKGKLFTVV HYAGEVTYET TGFLEKNRDL LHSDSIQLLS SCSCLLPQAF ASSMLIQSEK PVVGPLYKAG
0701: GADSQRLSVA TKFKSQLFQL MQRLGNTTPH FIRCIKPNNI QSPGVYEQGL VLQQLRCCGV LEVVRISRSG FPTRMSHQKF SRRYGFLLVE NIADRDPLSV
0801: SVAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK AAATIQSQVK
0901: SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN RWSEYETKMK
1001: SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD DAKFLVEVKS
1101: GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY

Arabidopsis Description

ATM1Myosin 1 [Source:UniProtKB/TrEMBL;Acc:F4JCF9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.