Factsheet for Solyc02g020910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0071g00210.t01	Wine grape	plastid	81.07	79.49
Bra001768.1-P	Field mustard	cytosol	75.8	77.2
KRG90612	Soybean	cytosol	77.96	77.09
KRH36145	Soybean	cytosol	78.13	76.87
KRG89103	Soybean	cytosol	77.87	76.62
Bra035834.1-P	Field mustard	cytosol	75.54	75.87
KRH40907	Soybean	cytosol	76.58	75.73
CDY24591	Canola	cytosol, plastid	75.8	75.67
CDY36068	Canola	cytosol, mitochondrion	72.95	74.49
AT1G50360.1	Thale cress	cytosol	73.98	74.24
Bra018844.1-P	Field mustard	cytosol	73.9	74.22
CDY22791	Canola	cytosol, plastid	73.9	73.9
CDY42506	Canola	cytosol, plastid	73.38	73.89
AT3G19960.2	Thale cress	cytosol, plastid	74.33	73.13
CDX82270	Canola	cytosol	75.54	73.08
Os10t0488800-01	Rice	cytosol	59.98	73.05
CDY29324	Canola	cytosol	72.34	72.91
Bra039641.1-P	Field mustard	cytosol	72.26	72.82
CDY53932	Canola	cytosol, plastid	72.17	70.7
HORVU1Hr1G043440.4	Barley	cytosol	67.67	69.35
Zm00001d032637_P004	Maize	mitochondrion	69.06	67.09
Zm00001d013967_P004	Maize	mitochondrion	68.8	66.67
GSMUA_Achr1P01870_001	Banana	cytosol	72.95	66.56
TraesCS1B01G179500.2	Wheat	mitochondrion	68.63	66.5
TraesCS1D01G159600.1	Wheat	mitochondrion	68.45	66.5
EER94044	Sorghum	mitochondrion	68.63	66.39
TraesCS1A01G162800.1	Wheat	mitochondrion	68.37	66.03
GSMUA_Achr2P10680_001	Banana	cytosol	67.59	61.97
CDY25361	Canola	cytosol	75.45	56.36
Solyc07g063590.2.1	Tomato	cytosol	51.34	50.0
Solyc10g006820.2.1	Tomato	cytosol	50.04	48.13
Solyc08g061520.2.1	Tomato	cytosol	16.77	41.81
Solyc06g083960.1.1	Tomato	cytosol	32.5	33.01
Solyc09g064200.2.1	Tomato	plastid	34.57	26.42
Solyc06g008090.2.1	Tomato	cytosol	33.88	26.42
Solyc11g006220.1.1	Tomato	cytosol, extracellular	34.57	26.21
Solyc06g008530.1.1	Tomato	cytosol	34.57	26.18
Solyc07g041150.2.1	Tomato	nucleus	34.31	25.96
Solyc01g081540.2.1	Tomato	nucleus	33.45	24.7
Solyc09g091080.2.1	Tomato	cytosol	32.76	23.31
Solyc08g061500.1.1	Tomato	cytosol	15.3	16.99

Protein Annotations

Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	Gene3D:2.30.30.360	MapMan:20.2.4.2	Gene3D:3.30.70.3240
Gene3D:3.40.850.10	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777
GO:GO:0003779	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016459	GO:GO:0016787	GO:GO:0051015	InterPro:IPR000048	InterPro:IPR001609
InterPro:IPR004009	InterPro:IPR008989	InterPro:IPR036961	InterPro:IQ_motif_EF-hand-BS	UniProt:K4B4U1	InterPro:Kinesin_motor_dom_sf
InterPro:MYSc_Myo8	InterPro:Myosin_N	InterPro:Myosin_S1_N	InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase	PFAM:PF00063
PFAM:PF00612	PRINTS:PR00193	PFscan:PS50096	PFscan:PS51456	PFscan:PS51844	PANTHER:PTHR13140
PANTHER:PTHR13140:SF685	SMART:SM00015	SMART:SM00242	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g020910.2	EnsemblPlants:Solyc02g020910.2.1
UniParc:UPI000276862D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:20301273..20336058

Molecular Weight (calculated)

130841.0 Da

IEP (calculated)

8.354

GRAVY (calculated)

-0.481

Length

1157 amino acids

Sequence
(BLAST)

0001: MAQRVKGTPS LNSIKSLPVG YAFGLNKSET VDAANHRMAS NTVSKNGELL NEANGNADGY SEESPYSRLN FSVEESLSSG DDDLSTNAFT PSCVKSKWSD
0101: TTSYVTKKKL HSWFQLADGS WELTTFISKS GNEVLISLSE GKVLKVKADD LIPANPDILD GVDDLMQLSY LNEPSVLYNL QYRYNRDMIY TKAGPVLVAV
0201: NPFKKVALYS NEYIEAYKRK SVESPHVYAI TDMAIREMVR DEVNQSIIIS GESGAGKTET AKIAMQYLAA LGGGSGIEDE ILKTNPILEA FGNAKTLRND
0301: NSSRFGKLIE IHFSETGKIS GANIQTFLLE KSRVVQCSEG ERSYHIFYQL CAGAPGALKE KLNLKDVSEY NYLRQSNCHS ISGVDDAEQF RIVMEALDVV
0401: HISKEDQESV FSMLAAVLWL GNISFTAVDN ENHAEPVVGE GLATVSTLIG CGVDELKLAL STRKMRVRND DIVQKLTLSQ ATDTRDALAK SIYSCLFDWL
0501: VEQINKSLAV GKRRTGRSIS ILDIYGFESF ERNSFEQFCI NYANERLQQH FNRHLFKLEQ EEYIQDGIDW TKVDFDDNQD CLNLFEKKPL GLLSLLDEES
0601: TFPNGTDISF ANKLKQHLNS NLCFRGERGK AFTVSHYAGE VTYDTTGFLE KNRDLLHSNS IQLLSSCKFH LPQTFASNML SQSEKPVVGP LYKSGGADSQ
0701: KLSVSTKFKG QLFQLMQRLE NTTPHFIRCI KPNNFQSPGK YEQELVLQQL RCCGVLEVVR ISRSGFPTRM SHQKFARRYG FLLLDHVSSQ DPLSVSVAIL
0801: HQFNILPDMY QVGFTKLFFR TGQIGVLEDT RNRTLHGILC VQSCFRGHQA RRDLKHFQRG IATLQSYVRG EKARKEYAIL LQKHKAAVCI QKQIRGRTKR
0901: KTYENVHDAS IVIQSVIRGW LVRRCSGDIG LLQFGGRKGN ESEEVLVKSS FLAELQRRVL RAEAALREKE EENDILHQRL QQYENRWSEY ELKMKSMEEI
1001: WQKQMRSLQS SLSIAKRSLA LDDSRRNSDA SVNPTDEKES SWETGSNQRA RESNGVRPMS AGLSVISRLA EEFEQRSQVF GDDAKFLVEV KSGQVEANLS
1101: PDRELRRLKQ MFEAWKKDYG SRLRETKVIL NKLGSDEGGS DKMKKKWWGR RNSTRLN

Best Arabidopsis Sequence Match ( AT3G19960.5 )
(BLAST)

0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE
0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP
0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIISGESGA GKTETAKIAM QYLAALGGGS GIEYEILKTN PILEAFGNAK
0301: TLRNDNSSRF GKLIEIHFSE SGKISGAQIQ TFLLEKSRVV QCAEGERSYH IFYQLCAGAS PALREKLNLT SAHEYKYLGQ SNCYSINGVD DAERFHTVKE
0401: ALDIVHVSKE DQESVFAMLA AVLWLGNVSF TVIDNENHVE PVADESLSTV AKLIGCNINE LTLTLSKRNM RVRNDTIVQK LTLPQAIDAR DALAKSIYSC
0501: LFDWLVEQIN KSLAVGKRRT GRSISILDIY GFESFDKNSF EQFCINYANE RLQQHFNRHL FKLEQEEYIQ DGIDWTRVDF EDNQNCLSLF EKKPLGLLSL
0601: LDEESTFPNG TDLTLANKLK QHLQSNSCFR GDKGKLFTVV HYAGEVTYET TGFLEKNRDL LHSDSIQLLS SCSCLLPQAF ASSMLIQSEK PVVGPLYKAG
0701: GADSQRLSVA TKFKSQLFQL MQRLGNTTPH FIRCIKPNNI QSPGVYEQGL VLQQLRCCGV LEVVRISRSG FPTRMSHQKF SRRYGFLLVE NIADRDPLSV
0801: SVAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK AAATIQSQVK
0901: SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN RWSEYETKMK
1001: SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD DAKFLVEVKS
1101: GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY

Arabidopsis Description

ATM1Myosin 1 [Source:UniProtKB/TrEMBL;Acc:F4JCF9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.