CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032637_P004	Maize	mitochondrion	95.15	95.55
Zm00001d013967_P004	Maize	mitochondrion	94.65	94.81
Os10t0488800-01	Rice	cytosol	74.0	93.16
HORVU1Hr1G043440.4	Barley	cytosol	85.03	90.08
TraesCS1A01G162800.1	Wheat	mitochondrion	88.88	88.73
TraesCS1B01G179500.2	Wheat	mitochondrion	88.55	88.69
TraesCS1D01G159600.1	Wheat	mitochondrion	88.29	88.67
Bra001768.1-P	Field mustard	cytosol	66.14	69.63
VIT_10s0071g00210.t01	Wine grape	plastid	68.23	69.15
KRG90612	Soybean	cytosol	67.64	69.15
Bra035834.1-P	Field mustard	cytosol	66.56	69.1
KRH36145	Soybean	cytosol	67.73	68.88
Solyc02g020910.2.1	Tomato	nucleus	66.39	68.63
CDY24591	Canola	cytosol, plastid	66.39	68.51
Bra018844.1-P	Field mustard	cytosol	65.55	68.06
CDY22791	Canola	cytosol, plastid	65.8	68.02
KRG89103	Soybean	cytosol	66.81	67.94
CDY42506	Canola	cytosol, plastid	65.22	67.89
CDY36068	Canola	cytosol, mitochondrion	64.05	67.61
KRH40907	Soybean	cytosol	66.05	67.52
GSMUA_Achr1P01870_001	Banana	cytosol	71.49	67.43
Bra039641.1-P	Field mustard	cytosol	64.46	67.16
CDY29324	Canola	cytosol	64.46	67.16
AT1G50360.1	Thale cress	cytosol	64.63	67.04
CDX82270	Canola	cytosol	66.3	66.3
AT3G19960.2	Thale cress	cytosol, plastid	64.55	65.65
CDY53932	Canola	cytosol, plastid	64.13	64.94
GSMUA_Achr2P10680_001	Banana	cytosol	65.89	62.44
CDY25361	Canola	cytosol	66.3	51.19
EER99532	Sorghum	cytosol	52.84	51.05
EES03165	Sorghum	cytosol	33.7	26.36
EER90459	Sorghum	cytosol	32.44	26.15
OQU76115	Sorghum	cytosol	32.36	26.13
OQU85951	Sorghum	cytosol	33.19	26.1
KXG34975	Sorghum	cytosol	31.35	26.01
OQU91854	Sorghum	cytosol	32.69	25.95
EES05882	Sorghum	cytosol	32.53	25.59
KXG37557	Sorghum	cytosol	31.27	24.04
OQU78360	Sorghum	cytosol	30.27	16.84
OQU87414	Sorghum	cytosol	30.85	15.46
KXG32782	Sorghum	cytosol	5.94	9.24

Protein Annotations

Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	Gene3D:2.30.30.360	MapMan:20.2.4.2	Gene3D:3.30.70.3240
Gene3D:3.40.850.10	EntrezGene:8067384	UniProt:C5WXH3	ncoils:Coil	EnsemblPlants:EER94044	ProteinID:EER94044
ProteinID:EER94044.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016459	GO:GO:0016787	GO:GO:0051015	InterPro:IPR000048	InterPro:IPR001609	InterPro:IPR004009
InterPro:IPR008989	InterPro:IPR036961	InterPro:IQ_motif_EF-hand-BS	InterPro:Kinesin_motor_dom_sf	InterPro:MYSc_Myo8	InterPro:Myosin_N
InterPro:Myosin_S1_N	InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase	PFAM:PF00063	PFAM:PF00612	PRINTS:PR00193
PFscan:PS50096	PFscan:PS51456	PFscan:PS51844	PANTHER:PTHR13140	PANTHER:PTHR13140:SF312	SMART:SM00015
SMART:SM00242	EnsemblPlantsGene:SORBI_3001G212300	SUPFAM:SSF52540	unigene:Sbi.11555	UniParc:UPI0001A829BC	RefSeq:XP_002467046.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:19543235..19552520

Molecular Weight (calculated)

134522.0 Da

IEP (calculated)

8.604

GRAVY (calculated)

-0.443

Length

1196 amino acids

Sequence
(BLAST)

0001: MASVEVRSVR KSAALRARGG PSKLQPARSM PLDYRYSAAG AASSPNGGGR GPAANGVGRR AAAAESEKEE DLVRLERDDA DSPYSSKAVT AEEEEEEVGE
0101: RGGGGDEVDS VAAATPRRLS PRAAASPTEG DARWSDTSSY GAKKKHRVFC QLPNGDWALC TVLTTSGDES VLKVSEGKVL RLKTDSLQPA NPEILDGVDD
0201: LMQLSYLSEA SVLYNLQYRY SQDMIYTKAG PVLVAVNPFK KVSLYGNEYI DAYRNKSMDS PHVYAIADAA LREMKRDEVN QSIIISGESG AGKTETAKIA
0301: MQYLASLGGG SGIEYEILQT NPILEAFGNA KTLRNDNSSR FGKLIEIHFS TTGRICGAMI QTFLLEKSRV VQCAVGERSY HIFYQLCAGA PVSLREKLNL
0401: KKVDEYKYLK QSCCYSIAGV DDAQMFRTVT EAMNIVHISK EDQENVFAMV SAVLWLGDVS FTVIDNESHV EIIVDEASRT VAELLGCSIE DLNLALSKRH
0501: MKVNNENIVQ KLTLAQATDT RDALAKSVYA SLFEWLVEQI NKSLSVGKRR TGRSISILDI YGFESFDKNS FEQFCINYAN ERLQQHFNRH LFKLEQEEYV
0601: EDGIDWAKVD FEDNQDCLSL FEKKPLGLLS LLDEESTFPN ATDLTFANKL KQHLDSNSCF RGERGKAFAV RHYAGEVAYD TSGFLEKNRD LLHMDSIQLL
0701: AKCKTSLPKM FASKMLVQSD NSMSVPYRSS AADSQKLSVA MKFKGQLFQL MQRLESTTPH FIRCIKPNNL QLPAIYEQGL VLQQLKCCGV LEVVRISRSG
0801: YPTRMTHQKF ARRYGFLLLE DVASQDPLSV SVAILHQFNI LPEMYQVGYT KLFFRTGQIG KLEDTRNRTL HGILRVQSCF RGHQARHHAR ERIRGVLALQ
0901: SFIRGENARQ IYSSLSRKHR AAVILQRNVR CWLARRYFIK LRKASVIIQS GIRGSLVRRC NGNIDLINVL REFESKQEAE GDQILIKASV LAELQRRILK
1001: AEATVREKDE ENEMLHQRLQ QYENRWLEYE QKMKAMEEMW QKQMRSLQSS LSVAKKSLAL DETPRMSDSS VDQSWESNGN HVSSGSQLVP RTGGREMNAG
1101: LSVIGRLNEE FEQRSQVFAD DAKFLVEVKS GQADASLNPD MELRRLKQNF DSWKKDFSGR IRETKVILNK LGNGNESSPN SVKRKWWGRL NTSKFS

Best Arabidopsis Sequence Match ( AT3G19960.5 )
(BLAST)

0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE
0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP
0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIISGESGA GKTETAKIAM QYLAALGGGS GIEYEILKTN PILEAFGNAK
0301: TLRNDNSSRF GKLIEIHFSE SGKISGAQIQ TFLLEKSRVV QCAEGERSYH IFYQLCAGAS PALREKLNLT SAHEYKYLGQ SNCYSINGVD DAERFHTVKE
0401: ALDIVHVSKE DQESVFAMLA AVLWLGNVSF TVIDNENHVE PVADESLSTV AKLIGCNINE LTLTLSKRNM RVRNDTIVQK LTLPQAIDAR DALAKSIYSC
0501: LFDWLVEQIN KSLAVGKRRT GRSISILDIY GFESFDKNSF EQFCINYANE RLQQHFNRHL FKLEQEEYIQ DGIDWTRVDF EDNQNCLSLF EKKPLGLLSL
0601: LDEESTFPNG TDLTLANKLK QHLQSNSCFR GDKGKLFTVV HYAGEVTYET TGFLEKNRDL LHSDSIQLLS SCSCLLPQAF ASSMLIQSEK PVVGPLYKAG
0701: GADSQRLSVA TKFKSQLFQL MQRLGNTTPH FIRCIKPNNI QSPGVYEQGL VLQQLRCCGV LEVVRISRSG FPTRMSHQKF SRRYGFLLVE NIADRDPLSV
0801: SVAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK AAATIQSQVK
0901: SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN RWSEYETKMK
1001: SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD DAKFLVEVKS
1101: GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY

Arabidopsis Description

ATM1Myosin 1 [Source:UniProtKB/TrEMBL;Acc:F4JCF9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.