CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36145	Soybean	cytosol	97.01	96.51
KRG89103	Soybean	cytosol	87.01	86.56
KRH40907	Soybean	cytosol	85.38	85.38
VIT_10s0071g00210.t01	Wine grape	plastid	80.51	79.83
Bra001768.1-P	Field mustard	cytosol	76.84	79.14
Bra035834.1-P	Field mustard	cytosol	77.52	78.73
CDY24591	Canola	cytosol, plastid	77.44	78.17
Solyc02g020910.2.1	Tomato	nucleus	77.09	77.96
CDY36068	Canola	cytosol, mitochondrion	74.19	76.61
AT1G50360.1	Thale cress	cytosol	75.38	76.5
Bra018844.1-P	Field mustard	cytosol	74.7	75.87
CDY42506	Canola	cytosol, plastid	74.19	75.54
CDY22791	Canola	cytosol, plastid	74.53	75.37
CDX82270	Canola	cytosol	76.67	75.0
Os10t0488800-01	Rice	cytosol	60.85	74.95
AT3G19960.2	Thale cress	cytosol, plastid	75.21	74.83
CDY29324	Canola	cytosol	73.16	74.56
Bra039641.1-P	Field mustard	cytosol	73.08	74.48
CDY53932	Canola	cytosol, plastid	72.91	72.23
KRH13051	Soybean	cytosol	16.15	70.52
HORVU1Hr1G043440.4	Barley	cytosol	67.78	70.24
Zm00001d032637_P004	Maize	mitochondrion	68.97	67.76
EER94044	Sorghum	mitochondrion	69.15	67.64
Zm00001d013967_P004	Maize	mitochondrion	68.97	67.59
TraesCS1D01G159600.1	Wheat	mitochondrion	68.63	67.42
TraesCS1B01G179500.2	Wheat	mitochondrion	68.72	67.34
TraesCS1A01G162800.1	Wheat	mitochondrion	68.46	66.86
GSMUA_Achr1P01870_001	Banana	cytosol	72.39	66.8
GSMUA_Achr2P10680_001	Banana	cytosol	66.92	62.04
CDY25361	Canola	cytosol	77.35	58.42
KRH22163	Soybean	cytosol	56.67	55.43
KRH27175	Soybean	cytosol	56.58	55.3
KRH26031	Soybean	cytosol	52.91	52.46
KRH55425	Soybean	cytosol	52.56	52.38
KRH32145	Soybean	cytosol	31.37	36.16
KRH19523	Soybean	cytosol	32.48	35.28
KRH19248	Soybean	cytosol	35.38	27.06
KRH15597	Soybean	cytosol	35.04	26.94
KRH02661	Soybean	cytosol	35.13	26.86
KRH32270	Soybean	cytosol	34.53	26.68
KRH19659	Soybean	cytosol	34.62	26.66
KRG92711	Soybean	cytosol	34.7	26.48
KRH67505	Soybean	cytosol	34.1	26.39
KRH61584	Soybean	cytosol	34.36	26.38
KRG95788	Soybean	cytosol	34.1	26.3
KRH34117	Soybean	cytosol	34.36	26.24
KRH52257	Soybean	cytosol	34.02	26.17
KRH68770	Soybean	cytosol	32.91	25.41
KRG89126	Soybean	cytosol	33.59	24.86
KRH13822	Soybean	cytosol	33.42	24.68
KRH43634	Soybean	cytosol	33.33	23.55
KRH40872	Soybean	cytosol	33.25	23.31

Protein Annotations

Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	EntrezGene:100782618	Gene3D:2.30.30.360	MapMan:20.2.4.2
Gene3D:3.30.70.3240	Gene3D:3.40.850.10	EMBL:ACUP02012627	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G102900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016459	GO:GO:0016787
GO:GO:0051015	UniProt:I1NF52	InterPro:IPR000048	InterPro:IPR001609	InterPro:IPR004009	InterPro:IPR008989
InterPro:IPR036961	InterPro:IQ_motif_EF-hand-BS	EnsemblPlants:KRG90612	ProteinID:KRG90612	ProteinID:KRG90612.1	ProteinID:KRG90613.1
InterPro:Kinesin_motor_dom_sf	InterPro:MYSc_Myo8	InterPro:Myosin_N	InterPro:Myosin_S1_N	InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase
PFAM:PF00063	PFAM:PF00612	PRINTS:PR00193	PFscan:PS50096	PFscan:PS51456	PFscan:PS51844
PANTHER:PTHR13140	PANTHER:PTHR13140:SF685	SMART:SM00015	SMART:SM00242	SUPFAM:SSF52540	UniParc:UPI000295AE34
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:34578542..34591984

Molecular Weight (calculated)

132289.0 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.436

Length

1170 amino acids

Sequence
(BLAST)

0001: MSQTSTVLPA FHSIKSLPPE FNPVLVEKHG DVKFRHTNPI GSNGLENGAL VAEISKEVNC RAGGMDLFDE DSPYGGKGRS LKDRPSNADE DSVSVSLPLP
0101: SILTSSRESR WNDANPYGSK KKLQSWLQLP NGDWELVKII TTSGAESVIS LPDGKVLKVK EESLVPANPD ILDGVDDLMQ LSYLNEPSVL FNLQYRYNHN
0201: MIYTKAGPVL VAVNPFKKVP LYGNDYIEAY KCKSIESPHV YAITDTAIQE MIRDEVNQSI IISGESGAGK TETAKIAMQY LATLGGGSGI ENEILKTNPI
0301: LEAFGNGKTL RNDNSSRFGK LIEIHFSETG KISGANIQTF LLEKSRVVQC NEGERSYHIF YQLCAGAPSS LREKLNLTSA EDYKYLRQSN CYSITGVDDA
0401: EEFRIVKEAL DVVHISKGDQ ENVFAMLAAV LWLGNISFTV VDNENHVQAV EDEGLFTVAK LIGCEIEDLK LTLSTRKMKV GNDIIVQKLT LSQAIDARDA
0501: LAKSIYACLF DWLVEQINQS LAVGKRRTGR SISILDIYGF ESFNRNSFEQ FCINYANERL QQHFNRHLFK LEQEEYIQDG IDWAKVEFED NQDCLNLFEK
0601: KPLGLLSLLD EESTFPNGTD LTFANKLKQH LNSNSCFKGE REKAFTVRHY AGEVTYDTSG FLEKNRDLLH LDSIQLLSSS KCHLPKLFAS HMLTQSEKPV
0701: VGPLHKSGGA DSQKLSVATK FKGQLFQLMQ RLESTTPHFI RCIKPNNLQS PGSYEQSLVL QQLRCCGVLE VVRISRSGFP TRVSHQKFAR RYGFLLLENV
0801: ASQDPLSVSV AILHQFNILP EMYQVGYTKL FFRTGQIGVL EDTRNRTLHG VLRVQSCFRG YRARCYRKEL WRGITTLQSF IRGEKSRKEY AALLQRHRAA
0901: VIIQKRMKTV LARNRMKSIN GAAVVIQSFI RGWLVRRCSG DIGLSKPRGI KTNESDEVLV KSSFLAELQR RVLKAEASLR EKEEENDILH QRLQQYENRW
1001: SEYELKMKSM EEVWQKQMRS LQSSLSIAKK SLAMDDSERN SDASVNASDD RDFSWDVGTN HRRQESNGAR SMSAGLSVIS RLAEEFEQRS QVFGDDAKFL
1101: VEVKSGQVEA SLNPDRELRR LKQMFEAWKK DYGARLRETK VILHKLGSED GSIEKVKKSW WGRRNSTRIS

Best Arabidopsis Sequence Match ( AT3G19960.5 )
(BLAST)

0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE
0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP
0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIISGESGA GKTETAKIAM QYLAALGGGS GIEYEILKTN PILEAFGNAK
0301: TLRNDNSSRF GKLIEIHFSE SGKISGAQIQ TFLLEKSRVV QCAEGERSYH IFYQLCAGAS PALREKLNLT SAHEYKYLGQ SNCYSINGVD DAERFHTVKE
0401: ALDIVHVSKE DQESVFAMLA AVLWLGNVSF TVIDNENHVE PVADESLSTV AKLIGCNINE LTLTLSKRNM RVRNDTIVQK LTLPQAIDAR DALAKSIYSC
0501: LFDWLVEQIN KSLAVGKRRT GRSISILDIY GFESFDKNSF EQFCINYANE RLQQHFNRHL FKLEQEEYIQ DGIDWTRVDF EDNQNCLSLF EKKPLGLLSL
0601: LDEESTFPNG TDLTLANKLK QHLQSNSCFR GDKGKLFTVV HYAGEVTYET TGFLEKNRDL LHSDSIQLLS SCSCLLPQAF ASSMLIQSEK PVVGPLYKAG
0701: GADSQRLSVA TKFKSQLFQL MQRLGNTTPH FIRCIKPNNI QSPGVYEQGL VLQQLRCCGV LEVVRISRSG FPTRMSHQKF SRRYGFLLVE NIADRDPLSV
0801: SVAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK AAATIQSQVK
0901: SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN RWSEYETKMK
1001: SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD DAKFLVEVKS
1101: GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY

Arabidopsis Description

ATM1Myosin 1 [Source:UniProtKB/TrEMBL;Acc:F4JCF9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.