Factsheet for Bra001843.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001843.1-P
Bra013602.1-P
Bra024839.1-P
Bra024840.1-P
Bra031301.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G21720.1	Bra024840.1-P	AT2G01950.1	19000166
AT3G21720.1	Bra001843.1-P	AT3G21720.1	21798944
AT3G21720.1	Bra031301.1-P	AT3G21720.1	21798944
AT3G21720.1	Bra013602.1-P	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031301.1-P	Field mustard	peroxisome	96.65	92.04
CDX92920	Canola	peroxisome	98.14	91.67
AT3G21720.1	Thale cress	peroxisome	94.05	87.85
KRH57633	Soybean	peroxisome	18.77	82.11
GSMUA_Achr9P11850_001	Banana	peroxisome	81.23	78.46
VIT_12s0059g02350.t01	Wine grape	peroxisome	82.9	77.43
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	81.97	76.7
PGSC0003DMT400065512	Potato	peroxisome	81.41	76.17
KRH25405	Soybean	peroxisome	79.74	74.61
KRH56100	Soybean	peroxisome	79.74	74.48
EER99471	Sorghum	peroxisome	79.18	74.22
TraesCS2A01G219100.1	Wheat	peroxisome	77.88	73.51
TraesCS2D01G224200.1	Wheat	peroxisome	77.7	73.33
HORVU2Hr1G045340.1	Barley	peroxisome	77.32	72.98
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.51	72.9
Zm00001d021666_P001	Maize	peroxisome	77.7	71.94
TraesCS2B01G244600.1	Wheat	peroxisome	77.51	67.04

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	EnsemblPlantsGene:Bra001843	EnsemblPlants:Bra001843.1
EnsemblPlants:Bra001843.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0019752	GO:GO:0046872	InterPro:Isocitrate_lyase
InterPro:Isocitrate_lyase_ph_CS	UniProt:M4CCB3	PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631
PANTHER:PTHR21631:SF26	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI000254064C	SEG:seg

Description

AT3G21720 (E=1e-278) ICL | ICL (ISOCITRATE LYASE); catalytic/ isocitrate lyase

Coordinates

chrA03:-:18821499..18825248

Molecular Weight (calculated)

60501.8 Da

IEP (calculated)

7.608

GRAVY (calculated)

-0.391

Length

538 amino acids

Sequence
(BLAST)

001: MEEEGRFEAE VAEVQTWWNS ERFKLTRRPY TARDVVALRG HLKQGYASNE MAKKLWRTLK SHQSNGTASR TFGALDPVQV TMMAKHLDTI YVSGWQCSST
101: HTSTNEPGPD LADYPYDTVP NKVEHLFFAQ QYHDRKQREA RMSMSREERT KTPFVDYLKP IIADGDTGFG GTTATVKLCK LFVERGAAGV HIEDQSSVTK
201: KCGHMAGKVL VAVSEHINRL VAARLQFDVM GTETVLVART DAVAATLIQS NIDSRDHQFI LGVTNPNLRG KSLSSLLAEG MAVGKNGPAL QAIEDQWLSS
301: ARLMTFSDAV VEALNRMNLN ENEKSQRVNE WLSHARYENC LSNEQGRELA AKLGVADLFW DWDLPRTREG FYRFQGSVTA AVVRGWAFAQ IADLIWMETA
401: SPNLNECTQF AEGVKSKTPE VMLAYNLSPS FNWDACRMTD QQMMEFIPRI ARLGYCWQFI TLAGFHADAL VVDTFAKDYA RRGMLAYVER IQREERSNGV
501: DTLAHQKWSG ANYYDRYLKT VQGGISSTAA MGKGKVTF

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.