Factsheet for Os07t0529000-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0529000-01
Os09t0133600-01
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	Os10t0114400-01	AT2G01950.1	19000166
AT3G21720.1	Os07t0529000-01	AT3G21720.1	21798944
AT3G21720.1	Os09t0133600-01	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G224200.1	Wheat	peroxisome	91.26	91.58
HORVU2Hr1G045340.1	Barley	peroxisome	90.73	91.05
TraesCS2A01G219100.1	Wheat	peroxisome	90.56	90.88
EER99471	Sorghum	peroxisome	88.81	88.5
Zm00001d021666_P001	Maize	peroxisome	86.36	85.03
TraesCS2B01G244600.1	Wheat	peroxisome	90.73	83.44
CDY24258	Canola	peroxisome	78.32	77.78
GSMUA_Achr9P11850_001	Banana	peroxisome	75.7	77.74
CDY38634	Canola	peroxisome	78.15	77.6
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	77.97	77.57
Bra031301.1-P	Field mustard	peroxisome	76.57	77.52
Bra001843.1-P	Field mustard	peroxisome	72.9	77.51
CDY33134	Canola	peroxisome	65.38	77.43
CDX92920	Canola	peroxisome	77.97	77.43
VIT_12s0059g02350.t01	Wine grape	peroxisome	77.97	77.43
AT3G21720.1	Thale cress	peroxisome	77.97	77.43
PGSC0003DMT400065512	Potato	peroxisome	77.1	76.7
KRH57633	Soybean	peroxisome	16.26	75.61
KRH25405	Soybean	peroxisome	74.3	73.91
KRH56100	Soybean	peroxisome	74.3	73.78
CDY33135	Canola	peroxisome	9.27	72.6

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	EntrezGene:4343441	MapMan:5.7.3.6.3	UniProt:A0A0A0QMT5
EMBL:AF251075	ProteinID:BAC83656.1	ProteinID:BAF21753.1	ProteinID:BAT01864.1	ProteinID:EEE67304.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987	GO:GO:0016829	GO:GO:0019752
GO:GO:0046872	InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	EMBL:KF737328	EnsemblPlantsGene:Os07g0529000	EnsemblPlants:Os07t0529000-01
PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	InterPro:Pyrv/PenolPyrv_Kinase-like_dom
UniProt:Q6Z6M4	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI00001BF3DC	RefSeq:XP_015644942.1	SEG:seg

Description

isocitrate lyase, endosperm-specific gene 107Similar to Isocitrate lyase (Fragment). (Os07t0529000-01)

Coordinates

chr7:-:20691213..20693521

Molecular Weight (calculated)

63054.5 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.292

Length

572 amino acids

Sequence
(BLAST)

001: MSSPFSVPSL IMEEEGRFEA EVAEVEAWWG TDRFRLTKRP YTARDVALLR GTLRQSYASG DMAKKLWRTL RAHQANGTAS RTFGALDPVQ VAMMAKHLDT
101: VYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QLYHDRKQRE ARMSMSRAER AHEPYVDYLK PIIADGDTGF GGATATVKLC KLFVERGAAG
201: VHLEDQSSVT KKCGHMAGKV LVAVSEHVNR LVAARLQFDI MGVETVLVAR TDAVAATLIQ TNVDARDHQF ILGATNPRLR NRSLAAVLSD AMSAGKNGRE
301: LQAIEDEWLA TAQLKTFSDC VRDAIASLNA TDADKQRKLQ EWSAATSHDK CVPLEQARDI AAGLGVTSLF WDWDLPRTRE GFYRFRGSVA AAVVRGRAFA
401: PHADVLWMET SSPNIAECTA FAEGVRAASP GAMLAYNLSP SFNWDASGMT DADMSEFIPR VARLGYVWQF ITLAGFHADA LVTDTFARDF ARRGMLAYVE
501: RIQREERSNG VETLQHQKWS GANFYDRVLK TVQGGISSTA AMGKGVTEEQ FKGSWTGPGS ESSSHVLAKS RM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.