CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925
CDX92920
CDY03088
CDY17621
CDY24258
CDY33134
CDY33135
CDY38634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	CDY03088	AT2G01950.1	19000166
AT3G21720.1	CDY17621	AT2G01950.1	19000166
AT3G21720.1	CDX92920	AT3G21720.1	21798944
AT3G21720.1	CDY24258	AT3G21720.1	21798944
AT3G21720.1	CDY33134	AT3G21720.1	21798944
AT3G21720.1	CDY33135	AT3G21720.1	21798944
AT3G21720.1	CDY38634	AT3G21720.1	21798944
AT3G21720.1	CDX79139	AT4G22240.1	21798944
AT3G21720.1	CDX82925	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33135	Canola	peroxisome	12.67	100.0
CDY33134	Canola	peroxisome	83.68	99.79
Bra031301.1-P	Field mustard	peroxisome	97.74	99.65
CDX92920	Canola	peroxisome	98.78	98.78
CDY24258	Canola	peroxisome	98.78	98.78
AT3G21720.1	Thale cress	peroxisome	95.66	95.66
VIT_12s0059g02350.t01	Wine grape	peroxisome	84.03	84.03
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	82.64	82.78
KRH57633	Soybean	peroxisome	17.53	82.11
PGSC0003DMT400065512	Potato	peroxisome	81.94	82.09
GSMUA_Achr9P11850_001	Banana	peroxisome	78.12	80.79
KRH25405	Soybean	peroxisome	79.69	79.83
KRH56100	Soybean	peroxisome	79.51	79.51
EER99471	Sorghum	peroxisome	78.12	78.4
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.6	78.15
TraesCS2D01G224200.1	Wheat	peroxisome	77.08	77.89
HORVU2Hr1G045340.1	Barley	peroxisome	76.91	77.72
TraesCS2A01G219100.1	Wheat	peroxisome	76.22	77.02
Zm00001d021666_P001	Maize	peroxisome	75.35	74.7
TraesCS2B01G244600.1	Wheat	peroxisome	76.91	71.22

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	GO:A0A078HMQ4	UniProt:A0A078HMQ4
EnsemblPlants:CDY38634	ProteinID:CDY38634	ProteinID:CDY38634.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004451
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009514	GO:GO:0009987	GO:GO:0016829	GO:GO:0019752	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00066333001
InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631
PANTHER:PTHR21631:SF26	MetaCyc:PWY-6969	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniPathway:UPA00703
UniParc:UPI0004EEC06C	SEG:seg	:	:	:	:

Description

BnaA05g19530DIsocitrate lyase [Source:UniProtKB/TrEMBL;Acc:A0A078HMQ4]

Coordinates

chrLK032428:-:218006..221719

Molecular Weight (calculated)

64343.4 Da

IEP (calculated)

7.385

GRAVY (calculated)

-0.356

Length

576 amino acids

Sequence
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER AKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDSRDHQF ILGVTNPSLR GKSLSSLLAE GMAVGKNGPA
301: LQAIEDQWLS SARLMTFSDA VVEALKRMNL SENEKSRRVN EWLNHARYEN CLSNEQGREL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVT AAVVRGWAFA
401: QIADLIWMET ASPDLNECTQ FAEGVKSKTP EVMLAYNLSP SFNWDASGMT DQQMMEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERSNG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKETWTRPGA AGMGEGTSLV VAKSRM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.