CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925
CDX92920
CDY03088
CDY17621
CDY24258
CDY33134
CDY33135
CDY38634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	CDY03088	AT2G01950.1	19000166
AT3G21720.1	CDY17621	AT2G01950.1	19000166
AT3G21720.1	CDX92920	AT3G21720.1	21798944
AT3G21720.1	CDY24258	AT3G21720.1	21798944
AT3G21720.1	CDY33134	AT3G21720.1	21798944
AT3G21720.1	CDY33135	AT3G21720.1	21798944
AT3G21720.1	CDY38634	AT3G21720.1	21798944
AT3G21720.1	CDX79139	AT4G22240.1	21798944
AT3G21720.1	CDX82925	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57633	Soybean	peroxisome	42.47	25.2
AT3G21720.1	Thale cress	peroxisome	100.0	12.67
CDY38634	Canola	peroxisome	100.0	12.67
CDX92920	Canola	peroxisome	98.63	12.5
CDY24258	Canola	peroxisome	98.63	12.5
Bra031301.1-P	Field mustard	peroxisome	84.93	10.97
VIT_12s0059g02350.t01	Wine grape	peroxisome	86.3	10.94
GSMUA_Achr9P11850_001	Banana	peroxisome	82.19	10.77
HORVU2Hr1G045340.1	Barley	peroxisome	78.08	10.0
TraesCS2D01G224200.1	Wheat	peroxisome	78.08	10.0
Zm00001d021666_P001	Maize	peroxisome	79.45	9.98
EER99471	Sorghum	peroxisome	78.08	9.93
PGSC0003DMT400065512	Potato	peroxisome	78.08	9.91
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	78.08	9.91
KRH56100	Soybean	peroxisome	78.08	9.9
TraesCS2A01G219100.1	Wheat	peroxisome	75.34	9.65
KRH25405	Soybean	peroxisome	75.34	9.57
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	72.6	9.27
TraesCS2B01G244600.1	Wheat	peroxisome	78.08	9.16
CDY33134	Canola	peroxisome	0.0	0.0

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:3.20.20.60	MapMan:35.1	GO:A0A078H3D3	UniProt:A0A078H3D3	EnsemblPlants:CDY33135
ProteinID:CDY33135	ProteinID:CDY33135.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004451	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019752	EnsemblPlantsGene:GSBRNA2T00053826001	InterPro:Isocitrate_lyase	PFAM:PF00463
PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	MetaCyc:PWY-6969	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	UniPathway:UPA00703
UniParc:UPI0004EF1828	SEG:seg	:	:	:	:

Description

BnaCnng07060DBnaCnng07060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3D3]

Coordinates

chrLK032307:-:91093..91492

Molecular Weight (calculated)

8519.2 Da

IEP (calculated)

10.158

GRAVY (calculated)

-0.584

Length

73 amino acids

Sequence
(BLAST)

1: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSH

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.