Factsheet for GSMUA_Achr9P11850_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001
GSMUA_Achr3P12980_001
GSMUA_Achr4P20110_001
GSMUA_Achr7P05510_001
GSMUA_Achr9P11850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT3G21720.1	GSMUA_Achr9P11850_001	AT3G21720.1	21798944
AT3G21720.1	GSMUA_Achr3P12980_001	AT4G22240.1	21798944
AT3G21720.1	GSMUA_Achr4P20110_001	AT4G22240.1	21798944
AT3G21720.1	GSMUA_Achr7P05510_001	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g02350.t01	Wine grape	peroxisome	85.28	82.47
CDY33135	Canola	peroxisome	10.77	82.19
KRH57633	Soybean	peroxisome	17.95	81.3
Bra001843.1-P	Field mustard	peroxisome	78.46	81.23
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	82.23	79.65
PGSC0003DMT400065512	Potato	peroxisome	82.23	79.65
CDY38634	Canola	peroxisome	80.79	78.12
CDX92920	Canola	peroxisome	80.61	77.95
CDY24258	Canola	peroxisome	80.43	77.78
Bra031301.1-P	Field mustard	peroxisome	78.64	77.52
AT3G21720.1	Thale cress	peroxisome	79.89	77.26
CDY33134	Canola	peroxisome	66.25	76.4
TraesCS2D01G224200.1	Wheat	peroxisome	78.1	76.32
HORVU2Hr1G045340.1	Barley	peroxisome	78.1	76.32
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.74	75.7
TraesCS2A01G219100.1	Wheat	peroxisome	77.38	75.61
EER99471	Sorghum	peroxisome	77.92	75.61
KRH25405	Soybean	peroxisome	77.56	75.13
KRH56100	Soybean	peroxisome	77.2	74.65
Zm00001d021666_P001	Maize	peroxisome	77.74	74.53
TraesCS2B01G244600.1	Wheat	peroxisome	77.74	69.61

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987
GO:GO:0016829	GO:GO:0019752	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr9G11850_001	EnsemblPlants:GSMUA_Achr9P11850_001	EnsemblPlants:GSMUA_Achr9T11850_001
InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	UniProt:M0TZJ4	PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161
PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI000296870C
SEG:seg	:	:	:	:	:

Description

Isocitrate lyase [Source:GMGC_GENE;Acc:GSMUA_Achr9G11850_001]

Coordinates

chr9:-:7675924..7678736

Molecular Weight (calculated)

62577.3 Da

IEP (calculated)

7.575

GRAVY (calculated)

-0.387

Length

557 amino acids

Sequence
(BLAST)

001: MASSFSVPSM IMAEESRFEA EVAEVQAWWN TERFKLTRRP YTARDVVSLR GTLRQSYASN ELAKKLWSTL KTHQANGTAS RTFGALDPVQ VTMMAKYLDT
101: IYVSGWQCSS THTTSNEPGP DLADYPYDTV PNKVEHLFFA QQFHDRKQRE ARMSMSREER ARTPYVDYFK PIIADGDTGF GGATATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVSVGEHINR LVAARLQFDI MGVETVLIAR TDAVAANLIQ TNVDSRDHQF ILGCTNPHLK GRSLAGALAE AMAVGKNGPE
301: LQAIEDEWLS MAKLKTFSEC VEDAINSLNI REDEKRQRLD EWANRSGYDK CLSYEQGRDV AARLGLENLF WDWDLPRTRD GFYRFKGSVM AAVVRGWAFA
401: PHTDLIWMET SSPDLVECTR FAEGVKSKHP ETMLAYNLSP SFNWDASGMA DDQMRDFIPR IAKLGFCWQF ITLAGFHADA LVVDTFARDF ARRGMLAYVE
501: RIQRQERNNG VDTLAHQRWS GASYYDKVLK TVQGGITSTA AMGKGKCHRG TIPRNMD

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.