Factsheet for Solyc07g052480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, nucleus

Predictor Summary:

nucleus 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081170.2.1
Solyc04g008430.1.1
Solyc07g052480.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT3G21720.1	Solyc07g052480.2.1	AT3G21720.1	21798944
AT3G21720.1	Solyc02g081170.2.1	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065512	Potato	peroxisome	97.39	97.39
VIT_12s0059g02350.t01	Wine grape	peroxisome	85.04	84.9
CDX92920	Canola	peroxisome	82.78	82.64
CDY38634	Canola	peroxisome	82.78	82.64
CDY24258	Canola	peroxisome	82.61	82.47
CDY33134	Canola	peroxisome	69.22	82.4
GSMUA_Achr9P11850_001	Banana	peroxisome	79.65	82.23
Bra031301.1-P	Field mustard	peroxisome	80.7	82.12
Bra001843.1-P	Field mustard	peroxisome	76.7	81.97
AT3G21720.1	Thale cress	peroxisome	81.39	81.25
KRH57633	Soybean	peroxisome	17.22	80.49
HORVU2Hr1G045340.1	Barley	peroxisome	78.09	78.77
TraesCS2D01G224200.1	Wheat	peroxisome	78.09	78.77
KRH56100	Soybean	peroxisome	78.61	78.47
KRH25405	Soybean	peroxisome	78.43	78.43
CDY33135	Canola	peroxisome	9.91	78.08
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.57	77.97
TraesCS2A01G219100.1	Wheat	peroxisome	77.22	77.89
EER99471	Sorghum	peroxisome	77.22	77.35
Zm00001d021666_P001	Maize	peroxisome	75.48	74.7
TraesCS2B01G244600.1	Wheat	peroxisome	77.74	71.86

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	GO:GO:0003674	GO:GO:0003824
GO:GO:0004451	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009514	GO:GO:0009987	GO:GO:0016829	GO:GO:0019752	GO:GO:0046872
InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	UniProt:K4CFE7	PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161
PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	EnsemblPlantsGene:Solyc07g052480.2	EnsemblPlants:Solyc07g052480.2.1
TIGRFAMs:TIGR01346	UniParc:UPI000276B828	SEG:seg	:	:	:

Description

Isocitrate lyase [Source:UniProtKB/TrEMBL;Acc:K4CFE7]

Coordinates

chr7:-:60970926..60973492

Molecular Weight (calculated)

64683.9 Da

IEP (calculated)

6.986

GRAVY (calculated)

-0.380

Length

575 amino acids

Sequence
(BLAST)

001: MAASYSVPSM IMEEERRFEA EVAEVQAWWN TERFRLTKRA YSARDVVALR GTMRQSYASN ELAQKLWRTL KTHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER ARTPFIDYLK PIIADGDTGF GGATATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ TNVDTRDHQF ILGASNPNLK GKGLATLLSE AMAAGKTGPE
301: LQAIEDNWLG MAELKTFSQC VTDAIKKMNL AEYEKQRKLN EWMNHSSYEK CLSHEQAREV AERLGLPNLF WDWDLPRTRE GFYRFQGSVE AAIVRGWAFA
401: EYCDLVWMET SSPDMVECTK FSQGVKTLRP ELMLAYNLSP SFNWDASGMN DNQMMDFIPR IAKLGYCWQF ITLAGFHADA LIVDTFAKDF ARRGMLAYVE
501: KIQREERSNG VDTLAHQKWS GANYYDRVLR TVQGGITSTA AMGKGVTEEQ FEEKWTRTGA TNLGDGSVVI AKARM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.