Factsheet for Bra031301.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001843.1-P
Bra013602.1-P
Bra024839.1-P
Bra024840.1-P
Bra031301.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G21720.1	Bra024840.1-P	AT2G01950.1	19000166
AT3G21720.1	Bra001843.1-P	AT3G21720.1	21798944
AT3G21720.1	Bra031301.1-P	AT3G21720.1	21798944
AT3G21720.1	Bra013602.1-P	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33134	Canola	peroxisome	84.96	99.38
CDY38634	Canola	peroxisome	99.65	97.74
Bra001843.1-P	Field mustard	peroxisome	92.04	96.65
AT3G21720.1	Thale cress	peroxisome	95.22	93.4
CDY33135	Canola	peroxisome	10.97	84.93
KRH57633	Soybean	peroxisome	17.88	82.11
VIT_12s0059g02350.t01	Wine grape	peroxisome	83.54	81.94
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	82.12	80.7
PGSC0003DMT400065512	Potato	peroxisome	81.24	79.83
GSMUA_Achr9P11850_001	Banana	peroxisome	77.52	78.64
KRH25405	Soybean	peroxisome	79.82	78.43
KRH56100	Soybean	peroxisome	79.65	78.12
EER99471	Sorghum	peroxisome	78.05	76.83
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.52	76.57
TraesCS2D01G224200.1	Wheat	peroxisome	76.99	76.32
HORVU2Hr1G045340.1	Barley	peroxisome	76.81	76.14
TraesCS2A01G219100.1	Wheat	peroxisome	76.28	75.61
Zm00001d021666_P001	Maize	peroxisome	75.04	72.98
TraesCS2B01G244600.1	Wheat	peroxisome	76.81	69.77

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	EnsemblPlantsGene:Bra031301	EnsemblPlants:Bra031301.1
EnsemblPlants:Bra031301.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0019752	GO:GO:0046872	InterPro:Isocitrate_lyase
InterPro:Isocitrate_lyase_ph_CS	UniProt:M4ER78	PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631
PANTHER:PTHR21631:SF26	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI000254771A	SEG:seg

Description

AT3G21720 (E=2e-297) ICL | ICL (ISOCITRATE LYASE); catalytic/ isocitrate lyase

Coordinates

chrA05:+:16178808..16181983

Molecular Weight (calculated)

63193.9 Da

IEP (calculated)

7.172

GRAVY (calculated)

-0.393

Length

565 amino acids

Sequence
(BLAST)

001: MEEEGRFEAE VAEVQTWWSS ERFKLTRRPY TARDVVALRG HLKQGYASNE MAKKLWRTLK SHQANGTASR TFGALDPVQV TMMAKHLDTI YVSGWQCSST
101: HTSTNEPGPD LADYPYDTVP NKVEHLFFAQ QYHDRKQREA RMSMSREERA KTPFVDYLKP IIADGDTGFG GTTATVKLCK LFVERGAAGV HIEDQSSVTK
201: KCGHMAGKVL VAVSEHINRL VAARLQFDVM GTETVLVART DAAAATLIQS DIDSRDHQFI LGVTNPSLRG KSLSSLLAEG MAVGKNGPAL QAIEDQWLSS
301: ARLMTFSDAV VEALKRMNLS ENEKSRRVNE WLNHARYENC LSNEQGRELA AKLGVTDLFW DWDLPRTREG FYRFQGSVTA AVVRGWAFAQ IADLIWMETA
401: SPDLNECTQF AEGVKSKTPE VMLAYNLSPS FNWDASGMTD QQMMEFIPRI ARLGYCWQFI TLAGFHADAL VVDTFAKDYA RRGMLAYVER IQREERSNGV
501: DTLAHQKWSG ANYYDRYLKT VQGGISSTAA MGKGVTEEQF KETWTRPGAA GMGEGTSLVV AKSRM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.