CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11500
KRH25405
KRH36517
KRH42483
KRH56100
KRH57633
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	KRH42483	AT2G01950.1	19000166
AT3G21720.1	KRH58580	AT2G01950.1	19000166
AT3G21720.1	KRH25405	AT3G21720.1	21798944
AT3G21720.1	KRH56100	AT3G21720.1	21798944
AT3G21720.1	KRH57633	AT3G21720.1	21798944
AT3G21720.1	KRH11500	AT4G22240.1	21798944
AT3G21720.1	KRH36517	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33135	Canola	peroxisome	25.2	42.47
KRH56100	Soybean	peroxisome	90.24	19.27
KRH25405	Soybean	peroxisome	88.62	18.96
Bra001843.1-P	Field mustard	peroxisome	82.11	18.77
GSMUA_Achr9P11850_001	Banana	peroxisome	81.3	17.95
Bra031301.1-P	Field mustard	peroxisome	82.11	17.88
CDX92920	Canola	peroxisome	82.93	17.71
CDY24258	Canola	peroxisome	82.93	17.71
VIT_12s0059g02350.t01	Wine grape	peroxisome	82.11	17.53
CDY38634	Canola	peroxisome	82.11	17.53
AT3G21720.1	Thale cress	peroxisome	82.11	17.53
HORVU2Hr1G045340.1	Barley	peroxisome	80.49	17.37
TraesCS2D01G224200.1	Wheat	peroxisome	80.49	17.37
TraesCS2A01G219100.1	Wheat	peroxisome	80.49	17.37
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	80.49	17.22
PGSC0003DMT400065512	Potato	peroxisome	78.86	16.87
EER99471	Sorghum	peroxisome	78.05	16.72
Zm00001d021666_P001	Maize	peroxisome	78.05	16.52
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	75.61	16.26
TraesCS2B01G244600.1	Wheat	peroxisome	80.49	15.92
CDY33134	Canola	peroxisome	42.28	10.77

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	EMBL:ACUP02002871	EnsemblPlantsGene:GLYMA_05G074000	GO:GO:0003674
GO:GO:0003824	GO:GO:0004451	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987	GO:GO:0019752
InterPro:Isocitrate_lyase	UniProt:K7KND5	EnsemblPlants:KRH57633	ProteinID:KRH57633	ProteinID:KRH57633.1	PFAM:PF00463
PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	MetaCyc:PWY-6969	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	UniParc:UPI00023C4CE9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:8564412..8564846

Molecular Weight (calculated)

14163.6 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.841

Length

123 amino acids

Sequence
(BLAST)

001: MEEEARVKVE VAEVQAWWNS ERQTYASNEM AKKLWHLLKN HQANGIASRT FGALDPVQVT QMAKHLDTIY VSGWQYSATH TTSNKPGPDL ADYPYDTVPN
101: KVGHLFFAQQ CHDRKQKEDR SMK

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.