CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

peroxisome: 19073762

msms PMID: 19073762 doi

Y Arai, M Hayashi, M Nishimura

Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585 Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11500
KRH25405
KRH36517
KRH42483
KRH56100
KRH57633
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	KRH42483	AT2G01950.1	19000166
AT3G21720.1	KRH58580	AT2G01950.1	19000166
AT3G21720.1	KRH25405	AT3G21720.1	21798944
AT3G21720.1	KRH56100	AT3G21720.1	21798944
AT3G21720.1	KRH57633	AT3G21720.1	21798944
AT3G21720.1	KRH11500	AT4G22240.1	21798944
AT3G21720.1	KRH36517	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25405	Soybean	peroxisome	97.74	97.91
KRH57633	Soybean	peroxisome	19.27	90.24
VIT_12s0059g02350.t01	Wine grape	peroxisome	80.56	80.56
CDX92920	Canola	peroxisome	79.86	79.86
CDY24258	Canola	peroxisome	79.86	79.86
Bra001843.1-P	Field mustard	peroxisome	74.48	79.74
Bra031301.1-P	Field mustard	peroxisome	78.12	79.65
CDY38634	Canola	peroxisome	79.51	79.51
CDY33134	Canola	peroxisome	66.15	78.88
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	78.47	78.61
AT3G21720.1	Thale cress	peroxisome	78.12	78.12
CDY33135	Canola	peroxisome	9.9	78.08
PGSC0003DMT400065512	Potato	peroxisome	77.43	77.57
GSMUA_Achr9P11850_001	Banana	peroxisome	74.65	77.2
HORVU2Hr1G045340.1	Barley	peroxisome	74.31	75.09
TraesCS2D01G224200.1	Wheat	peroxisome	74.31	75.09
EER99471	Sorghum	peroxisome	74.31	74.56
TraesCS2A01G219100.1	Wheat	peroxisome	73.78	74.56
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	73.78	74.3
Zm00001d021666_P001	Maize	peroxisome	72.57	71.94
TraesCS2B01G244600.1	Wheat	peroxisome	74.31	68.81

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	EntrezGene:100789036	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	EMBL:AB333789
EMBL:ACUP02004100	UniProt:B0M1A1	ncoils:Coil	EMBL:DQ371903	EnsemblPlantsGene:GLYMA_06G303200	GO:GO:0003674
GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987	GO:GO:0016829	GO:GO:0019752
GO:GO:0046872	InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	EnsemblPlants:KRH56100	ProteinID:KRH56100	ProteinID:KRH56100.1
PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	MetaCyc:PWY-6969
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI000165BB56	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:49264161..49268245

Molecular Weight (calculated)

64845.9 Da

IEP (calculated)

7.671

GRAVY (calculated)

-0.472

Length

576 amino acids

Sequence
(BLAST)

001: MAASLFMPSS IVEEEARFEA EVAEVQAWWN SERFRLTKRP YTARDVVSLR GNLRQTYASN EMAKKLWRLL KNHQANGTAS RTFGALDPVQ VTQMAKHLDT
101: IYVSGWQCSA THTTSNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQKE ERMRMSREER ARTPYVDYLR PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: IHIEDQSSVT KKCGHMAGKV LVAISEHINR LVAARLQFDV MGVETVLVAR TDAEAANLIQ SNIDTRDHQF ILGVTNPNLK GKSLATLMQQ GMAAGKNGAE
301: LQALEDEWLS KAQLKTLSEA VVEAIERQNN IGEEEKRRKL NEWMHHSSYE RCLSNEEGRE IAEKLGVRNL FWDWDLPRTR EGFYRFKGSV TASVVRGCAF
401: SPHADVIWME TASPNVVECT EFSEGVRSKH PQMMLGYNLS PSFNWDASGM SDEQMKDFIP KIAKLGYVWQ FITVGGLHSN ALITSTFARD FANRGMLAYV
501: ERIQREERNN GVDTLAHQKW AGANYYDRYL KTVQGGVAST AAMGKGVTEE QFKESWTRSG AVNIDRGSIV VAKARM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.