CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925
CDX92920
CDY03088
CDY17621
CDY24258
CDY33134
CDY33135
CDY38634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	CDY03088	AT2G01950.1	19000166
AT3G21720.1	CDY17621	AT2G01950.1	19000166
AT3G21720.1	CDX92920	AT3G21720.1	21798944
AT3G21720.1	CDY24258	AT3G21720.1	21798944
AT3G21720.1	CDY33134	AT3G21720.1	21798944
AT3G21720.1	CDY33135	AT3G21720.1	21798944
AT3G21720.1	CDY38634	AT3G21720.1	21798944
AT3G21720.1	CDX79139	AT4G22240.1	21798944
AT3G21720.1	CDX82925	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92920	Canola	peroxisome	99.48	99.48
CDY38634	Canola	peroxisome	98.78	98.78
CDY33135	Canola	peroxisome	12.5	98.63
CDY33134	Canola	peroxisome	82.64	98.55
AT3G21720.1	Thale cress	peroxisome	95.49	95.49
VIT_12s0059g02350.t01	Wine grape	peroxisome	83.68	83.68
KRH57633	Soybean	peroxisome	17.71	82.93
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	82.47	82.61
PGSC0003DMT400065512	Potato	peroxisome	81.77	81.91
GSMUA_Achr9P11850_001	Banana	peroxisome	77.78	80.43
KRH25405	Soybean	peroxisome	80.03	80.17
KRH56100	Soybean	peroxisome	79.86	79.86
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.78	78.32
EER99471	Sorghum	peroxisome	77.78	78.05
TraesCS2D01G224200.1	Wheat	peroxisome	76.91	77.72
HORVU2Hr1G045340.1	Barley	peroxisome	76.74	77.54
TraesCS2A01G219100.1	Wheat	peroxisome	76.74	77.54
Zm00001d021666_P001	Maize	peroxisome	75.17	74.53
TraesCS2B01G244600.1	Wheat	peroxisome	76.91	71.22

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	GO:A0A078GI02	UniProt:A0A078GI02
EnsemblPlants:CDY24258	ProteinID:CDY24258	ProteinID:CDY24258.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004451	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829
GO:GO:0019752	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00026400001	InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	PFAM:PF00463
PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	MetaCyc:PWY-6969	InterPro:Pyrv/PenolPyrv_Kinase-like_dom
SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniPathway:UPA00703	UniParc:UPI0004EEB306	SEG:seg	:

Description

BnaC03g42310DIsocitrate lyase [Source:UniProtKB/TrEMBL;Acc:A0A078GI02]

Coordinates

chrLK032156:-:46776..51841

Molecular Weight (calculated)

64386.4 Da

IEP (calculated)

7.385

GRAVY (calculated)

-0.365

Length

576 amino acids

Sequence
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWN SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDSRDHQF ILGVTNPNLR GKSLSSLLAE GMAVGKNGPA
301: LQAIEDQWLS SARLMTFSDA VVEALKRMNL TENEKSRRVN EWLSHARYEN CLSNEQGREL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVT AAVVRGWAFA
401: QIADLIWMET ASPDLNECTQ FAEGVKSKTP DVMLAYNLSP SFNWDASGMT DQQMMEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERSNG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA AGMGEGTSLV VAKSRM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.