Factsheet for PGSC0003DMT400065512

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043112
PGSC0003DMT400065512
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT3G21720.1	PGSC0003DMT400065512	AT3G21720.1	21798944
AT3G21720.1	PGSC0003DMT400043112	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	97.39	97.39
VIT_12s0059g02350.t01	Wine grape	peroxisome	84.17	84.03
GSMUA_Achr9P11850_001	Banana	peroxisome	79.65	82.23
CDX92920	Canola	peroxisome	82.09	81.94
CDY38634	Canola	peroxisome	82.09	81.94
CDY24258	Canola	peroxisome	81.91	81.77
CDY33134	Canola	peroxisome	68.52	81.57
Bra001843.1-P	Field mustard	peroxisome	76.17	81.41
Bra031301.1-P	Field mustard	peroxisome	79.83	81.24
AT3G21720.1	Thale cress	peroxisome	80.7	80.56
KRH57633	Soybean	peroxisome	16.87	78.86
CDY33135	Canola	peroxisome	9.91	78.08
HORVU2Hr1G045340.1	Barley	peroxisome	77.22	77.89
TraesCS2D01G224200.1	Wheat	peroxisome	77.04	77.72
KRH56100	Soybean	peroxisome	77.57	77.43
KRH25405	Soybean	peroxisome	77.39	77.39
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	76.7	77.1
TraesCS2A01G219100.1	Wheat	peroxisome	76.17	76.84
EER99471	Sorghum	peroxisome	76.35	76.48
Zm00001d021666_P001	Maize	peroxisome	74.61	73.84
TraesCS2B01G244600.1	Wheat	peroxisome	76.87	71.06

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	EntrezGene:102581970	Gene3D:3.20.20.60	MapMan:5.7.3.6.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987
GO:GO:0016829	GO:GO:0019752	GO:GO:0046872	InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	UniProt:M1CE49
PFAM:PF00463	EnsemblPlantsGene:PGSC0003DMG400025487	PGSC:PGSC0003DMG400025487	EnsemblPlants:PGSC0003DMT400065512	PIRSF:PIRSF001362	ScanProsite:PS00161
PANTHER:PTHR21631	PANTHER:PTHR21631:SF26	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI000295B58A
RefSeq:XP_006367277.1	SEG:seg	:	:	:	:

Description

Isocitrate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400025487]

Coordinates

chr7:-:47102334..47104710

Molecular Weight (calculated)

64651.0 Da

IEP (calculated)

7.216

GRAVY (calculated)

-0.366

Length

575 amino acids

Sequence
(BLAST)

001: MAASFSVPSM IMEEERRFEA EAAEVQAWWN TERFRLTKRA YSARDVVALR GTMRQSYASN ELAQKLWRTL KTHQANGTAS RTFGALDPVQ VTMMAKHLDS
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER ARTPFIDYLK PIIADGDTGF GGATATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDI MGTETVLVAR TDAVAATLIQ TNVDTRDHQF ILGVSNPNLK GKGLATLLSE AMAAGKTGPE
301: LQAIEDNWLG MAELKTFSQC VTDAIKKMNL AEHEKQRRLN QWMNHSSYEK CLSHEQAREV VERLGLPNLF WDWDLPRTRE GFYRFQGSVE AAIVRGWAFA
401: EYCDLVWMET SSPDMVECTK FSEGVKSLRP ELMLAYNLSP SFNWDASGMN DNQMMDFIPR IAKLGYCWQF ITLAGFHADA LIVDTFAKDF AKRGMLAYVE
501: KIQREERSHG VDTLAHQKWS GANYYDRVLR TVQGGITSTA AMGKGVTEEQ FEAKWTRTGT TNLGDGSVVI AKARM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.