Factsheet for VIT_12s0059g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01
VIT_12s0059g02350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21720.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT3G21720.1	VIT_12s0059g02350.t01	AT3G21720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33135	Canola	peroxisome	10.94	86.3
GSMUA_Achr9P11850_001	Banana	peroxisome	82.47	85.28
Solyc07g052480.2.1	Tomato	extracellular, nucleus, peroxisome	84.9	85.04
PGSC0003DMT400065512	Potato	peroxisome	84.03	84.17
CDY38634	Canola	peroxisome	84.03	84.03
CDX92920	Canola	peroxisome	83.85	83.85
CDY24258	Canola	peroxisome	83.68	83.68
Bra031301.1-P	Field mustard	peroxisome	81.94	83.54
CDY33134	Canola	peroxisome	69.62	83.02
Bra001843.1-P	Field mustard	peroxisome	77.43	82.9
AT3G21720.1	Thale cress	peroxisome	82.64	82.64
KRH57633	Soybean	peroxisome	17.53	82.11
KRH25405	Soybean	peroxisome	80.73	80.87
KRH56100	Soybean	peroxisome	80.56	80.56
TraesCS2D01G224200.1	Wheat	peroxisome	77.26	78.07
Os07t0529000-01	Rice	peroxisome, plasma membrane, plastid	77.43	77.97
HORVU2Hr1G045340.1	Barley	peroxisome	77.08	77.89
EER99471	Sorghum	peroxisome	77.6	77.87
TraesCS2A01G219100.1	Wheat	peroxisome	76.39	77.19
Zm00001d021666_P001	Maize	peroxisome	76.04	75.39
TraesCS2B01G244600.1	Wheat	peroxisome	76.91	71.22

Protein Annotations

KEGG:00630+4.1.3.1	Gene3D:1.10.10.850	EntrezGene:100248231	wikigene:100248231	Gene3D:3.20.20.60	MapMan:5.7.3.6.3
ProteinID:CCB52047	ProteinID:CCB52047.1	ncoils:Coil	UniProt:F6HIK1	EMBL:FN595765	GO:GO:0003674
GO:GO:0003824	GO:GO:0004451	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987
GO:GO:0016829	GO:GO:0019752	GO:GO:0046872	InterPro:Isocitrate_lyase	InterPro:Isocitrate_lyase_ph_CS	EntrezGene:LOC100248231
wikigene:LOC100248231	PFAM:PF00463	PIRSF:PIRSF001362	ScanProsite:PS00161	PANTHER:PTHR21631	PANTHER:PTHR21631:SF26
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGRFAMs:TIGR01346	UniParc:UPI00019845B6	ArrayExpress:VIT_12s0059g02350	EnsemblPlantsGene:VIT_12s0059g02350
EnsemblPlants:VIT_12s0059g02350.t01	unigene:Vvi.21244	RefSeq:XP_002280024	RefSeq:XP_002280024.1	SEG:seg	:

Description

Isocitrate lyase [Source:UniProtKB/TrEMBL;Acc:F6HIK1]

Coordinates

chr12:-:7139319..7142727

Molecular Weight (calculated)

64651.0 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.384

Length

576 amino acids

Sequence
(BLAST)

001: MAASFGVPSM ILEEEGRFEA EVAEVQAWWN SERFKLTRRP YSARDVVALR GNLKQSYGSN EMAKKLWKTL KTHQANGTAS RTFGALDPVQ VAMMAKHLDT
101: IYVSGWQCSS THTTTNEPGP DLADYPYDTV PNKVEHLYFA QQYHDRKQKE ARMSMSREER ARTPYVDYLK PIIADGDTGF GGATATVKLC KLFVERGAAG
201: VHIEDQSSMT KKCGHMAGKV LVSVSEHINR LVAARLQFDV MGVETVLVAR TDAVAANLIQ TNVDTRDHQF ILGATNPNLK GKGLATILAE AMAAGKTGAE
301: LQAIEDNWLS VAQLKTFSEC VVDAINNLNI REDEKRRRLN EWMNHSGYDK CLSNDQGREI AERLGLRNLF WDWDLPRTRE GFYRFKGSVM AAIVRGWAFA
401: PYADLIWMET ASPDLVECTK FAEGVKSMQP EIMLAYNLSP SFNWDASGMT DEQMRDFIPR IARLGYCWQF ITLAGFHADA LIIDTFARDF ARRGMQAYVE
501: KIQREERNNG VDTLAHQKWS GANYYDRVLK TVQGGISSTA AMGKGVTEEQ FKETWTLPRG MGMGEGNTLV IAKSRM

Best Arabidopsis Sequence Match ( AT3G21720.1 )
(BLAST)

001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM

Arabidopsis Description

ICLIsocitrate lyase [Source:UniProtKB/Swiss-Prot;Acc:P28297]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.