CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37214	Canola	cytosol, mitochondrion, nucleus, plastid	43.69	44.12
CDY12248	Canola	cytosol	53.4	36.91
Os06t0728902-01	Rice	plastid	56.31	30.21
CDY72646	Canola	cytosol	52.43	27.27
CDY38027	Canola	cytosol	52.43	27.27
CDY01570	Canola	cytosol	52.43	27.27
CDX86961	Canola	cytosol	52.43	27.27
HORVU5Hr1G029220.1	Barley	cytosol	12.62	21.31
Zm00001d027475_P001	Maize	mitochondrion, plastid	59.22	19.74
CDY42081	Canola	cytosol	51.46	19.63
CDY67195	Canola	cytosol	50.49	19.4
CDY12867	Canola	cytosol	54.37	17.89
CDY67378	Canola	cytosol	56.31	12.39
CDY42080	Canola	cytosol	56.31	12.37
Os03t0128200-01	Rice	mitochondrion	61.16	11.69
Zm00001d018560_P002	Maize	plastid	59.22	10.08
Os02t0832400-02	Rice	nucleus, peroxisome, plasma membrane, plastid	59.22	6.48
Zm00001d014867_P001	Maize	plastid	58.25	5.45
CDY10203	Canola	plasma membrane	73.79	4.84
CDY06215	Canola	cytosol	81.55	4.03
CDY06644	Canola	cytosol	73.79	3.96
CDY09971	Canola	cytosol	80.58	3.92
CDX67777	Canola	cytosol	70.87	3.77
CDY67918	Canola	cytosol, nucleus, plasma membrane	31.07	3.37
TraesCS5A01G490800.2	Wheat	mitochondrion	61.16	3.24
TraesCS4B01G321300.2	Wheat	mitochondrion	61.16	3.24
CDY42084	Canola	cytosol, nucleus, plasma membrane	60.19	3.23
TraesCS4D01G317900.5	Wheat	mitochondrion	61.16	3.23
CDY12242	Canola	mitochondrion	60.19	3.2
CDY10125	Canola	mitochondrion	60.19	3.19
CDX98348	Canola	cytosol, golgi, plasma membrane	70.87	3.17
TraesCS6D01G405600.1	Wheat	plastid	60.19	3.15
TraesCS6B01G468200.1	Wheat	golgi, unclear	60.19	3.15
TraesCS6A01G420100.1	Wheat	plastid	60.19	3.14
VIT_13s0156g00210.t01	Wine grape	mitochondrion	59.22	3.13
Zm00001d027472_P002	Maize	mitochondrion	59.22	3.13
KRH43561	Soybean	mitochondrion	59.22	3.13
OQU86033	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	59.22	3.12
CDX85677	Canola	cytosol, mitochondrion, nucleus, plasma membrane	59.22	3.12
OQU93328	Sorghum	mitochondrion	59.22	3.12
CDX91152	Canola	cytosol, mitochondrion, nucleus, plasma membrane	59.22	3.12
CDX97217	Canola	cytosol	59.22	3.12
CDX69678	Canola	cytosol	59.22	3.12
TraesCS7A01G555700.1	Wheat	plastid	59.22	3.11
TraesCS7B01G480300.1	Wheat	plastid	59.22	3.11
Zm00001d036351_P098	Maize	plastid	59.22	3.11
EER90434	Sorghum	plastid	59.22	3.1
TraesCS7D01G554900.1	Wheat	plastid	59.22	3.1
KRH13867	Soybean	mitochondrion	57.28	3.03
CDX81451	Canola	cytosol, plastid	52.43	2.8
CDX98473	Canola	cytosol	39.81	2.1
CDY08011	Canola	cytosol	34.95	1.89
CDX74058	Canola	mitochondrion	34.95	1.84
CDY24642	Canola	cytosol	33.98	1.83
CDY33198	Canola	cytosol, mitochondrion	31.07	1.69
CDX75010	Canola	cytosol, mitochondrion	31.07	1.68
CDY34913	Canola	cytosol	28.16	1.53
CDX71163	Canola	cytosol, extracellular, plasma membrane	0.97	1.23
CDY44741	Canola	cytosol, nucleus, plasma membrane	6.8	0.63
CDY16628	Canola	cytosol, nucleus, plasma membrane	6.8	0.63
CDY48567	Canola	plasma membrane	4.85	0.28
CDY21974	Canola	plasma membrane	4.85	0.28
CDY67747	Canola	mitochondrion	0.97	0.16
CDY47273	Canola	plasma membrane	1.94	0.12
CDY05323	Canola	golgi, plasma membrane	0.0	0.0
CDY47436	Canola	extracellular	0.0	0.0
Zm00001d018565_P002	Maize	cytosol	0.0	0.0
Zm00001d018562_P003	Maize	golgi	0.0	0.0
CDY47126	Canola	plasma membrane	0.0	0.0
Zm00001d014866_P002	Maize	cytosol, extracellular	0.0	0.0
Zm00001d014865_P001	Maize	cytosol	0.0	0.0
CDY37215	Canola	plasma membrane	0.0	0.0
CDY44742	Canola	cytosol	0.0	0.0
Os02t0832500-01	Rice	plasma membrane	0.0	0.0
CDY10204	Canola	plasma membrane	0.0	0.0
CDY16627	Canola	cytosol	0.0	0.0
Os03t0128100-01	Rice	cytosol, plasma membrane	0.0	0.0
Os06t0728800-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX72782	EnsemblPlantsGene:GSBRNA2T00103165001	Gene3D:1.25.40.270	InterPro:IPR023175	InterPro:VPS_Vta1/CALS_N	PANTHER:PTHR12741
PANTHER:PTHR12741:SF16	PFAM:PF04652	ProteinID:CDX72782	ProteinID:CDX72782.1	UniParc:UPI0004EDC8B9	MapMan:35.1

Description

BnaC06g32300D

Coordinates

chrLK031797:-:220309..222225

Molecular Weight (calculated)

11934.9 Da

IEP (calculated)

4.269

GRAVY (calculated)

-0.637

Length

103 amino acids

Sequence
(BLAST)

001: MMMIDRNEDE NIIDSELVPS SLAAIAPILR VANDIEADNP RVAYLCRFHA FERAHTMDPT SSGRGVRPFK TYLLHKLQEE EPTSDPNEIQ TYYQNFYEDN
101: IEN

Best Arabidopsis Sequence Match ( AT3G59100.1 )
(BLAST)

0001: MEASSSGTAE LPRSLSRRAP SRATTMMIDR PNEDASAMDS ELVPSSLASI APILRVANEI EKDNPRVAYL CRFHAFEKAH RMDATSSGRG VRQFKTYLLH
0101: RLEKEEEETK PQLAKNDPRE IQAYYQNFYE KYIKEGETSR KPEEMARLYQ IASVLYDVLK TVVPSPKVDY ETRRYAEEVE RKRDRYEHYN ILPLYAVGTK
0201: PAIVELPEVK AAFSAVRNVR NLPRRRIHLP SNTPNEMRKA RTKLNDILEW LASEFGFQRG NVANQREHII LLLANADIRK RNDEEYDELK PSTVTELMDK
0301: TFKSYYSWCK YLHSTSNLKF PDDCDKQQLQ LIYISLYLLI WGEASNVRFM PECICYIFHN MANDVYGILF SNVEAVSGET YETEEVIDEE SFLRTVITPI
0401: YQVIRNEAKR NKGGTASHSQ WRNYDDLNEY FWSKKCFKIG WPLDLKADFF LNSDEITPQD ERLNQVTYGK SKPKTNFVEV RTFWNLFRDF DRMWIFLVMA
0501: FQAMVIVGWH GSGSLGDIFD KDVFKTVLTI FITSAYLTLL QAALDIILNF NAWKNFKFSQ ILRYLLKFAV AFMWAVLLPI AYSKSVQRPT GVVKFFSTWT
0601: GDWKDQSFYT YAVSFYVLPN ILAALLFLVP PFRRAMECSD MRPIKVIMWW AQPKLYVGRG MHEDMFSLFK YTTFWIMLLI SKLAFNYYVE ILPLITPTKM
0701: IMNLHIGHYQ WHEFFPHATN NIGVVIAIWA PIVLVYLMDT QIWYAIFSTL FGGIHGAFSH LGEIRTLGML RSRFESIPIA FSRTLMPSED AKRKHADDYV
0801: DQKNITNFSQ VWNEFIYSMR SEDKISDRDR DLLLVPSSSG DVSVIQWPPF LLASKIPIAV DMAKDFKGKE DAELFRKIKS DSYMYYAVIE SYETLKKIIY
0901: ALLEDEADRR VMNQVFLEVD MSMQQQRFIY EFRMSGLPLL SDKLEKFLSI LLSDYEDQGT YKSQLINVFQ DVIEIITQDL LVNGHEILER ARVHSPDIKN
1001: EKKEQRFEKI NIHLVRDRCW REKVIRLHLL LSVKESAINV PQNLEARRRI TFFANSLFMN MPSAPRIRDM LSFSVLTPYY KEDVLYSEED LNKENEDGIS
1101: ILFYLQKIYP DEWTNYLDRL KDPKLPEKDK SEFLREWVSY RGQTLARTVR GMMYYRQALE LQCYQEVAGE QAEFSVFRAM ASNDENQKAF LERARALADL
1201: KFTYVVSCQV YGNQKKSGDI HNRSCYTNIL QLMLKYPSLR VAYVDEREET ADAKSPKVFY SVLLKGGDKF DEEIYRIKLP GPPAEIGEGK PENQNHAIIF
1301: TRGEALQTID MNQDNYFEEA FKLRNVLEEF NKERVGRRKP TILGLREHIF TGSVSSLAWF MSNQESSFVT IGQRILANPL RVRFHYGHPD IFDRIFHITR
1401: GGVSKASKVI NLSEDIFGGF NSTLRGGYVT HHEYIQVGKG RDVGLNPISI FEAKVANGNG EQTLSRDVYR LGHRFDFYRM LSFYFTTIGF YFSSMLTVLT
1501: VYAFLYGRMY MVMSGLEKEI LRLASPNQLE ALEQALATQS IFQLGFLMVL PMVMEIGLEH GFRSAIVDFF IMQLQLASVF FTFQLGTKSH YYGRTILHGG
1601: SKYRPTGRGF VVFHAKFAEN YRLYSRSHFV KGLELLLLLV VYQIYGHSYR SSNLYLYITV SMWFMVGSWL FAPFIFNPSG FEWQKTVDDW TDWKRWLGDR
1701: GGIGIPVEKS WESWWNVEQE HLKHTSIRGR ILEITLALRF FIYQYGIVYQ LNISQRSKSF LVYGLSWVVL LTSLLVLKMV SMGRRRFGTD FQLMFRILKA
1801: LLFLGFLSVM TILFVVFKLT LTDLSASVLA FLPTGWAILL IGQVLRSPIK ALGVWDSVKE LGRAYENIMG LVIFAPIAVL SWFPIVSEFQ ARLLFNQAFS
1901: RGLQISMILA GRKDKATSSH K

Arabidopsis Description

CALS6Putative callose synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.