Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51435 | Canola | nucleus | 87.69 | 90.84 |
| CDY07508 | Canola | nucleus | 78.85 | 79.46 |
| CDX67619 | Canola | nucleus | 78.46 | 79.38 |
| CDY51434 | Canola | cytosol | 9.62 | 71.43 |
| VIT_13s0067g03320.t01 | Wine grape | nucleus | 67.31 | 66.04 |
| PGSC0003DMT400082463 | Potato | nucleus | 64.62 | 65.88 |
| Solyc04g009550.2.1 | Tomato | nucleus | 64.23 | 65.49 |
| Solyc04g049710.2.1 | Tomato | nucleus | 65.77 | 64.77 |
| KRH36276 | Soybean | nucleus | 65.0 | 63.77 |
| EES15493 | Sorghum | nucleus | 62.69 | 63.67 |
| KRG93030 | Soybean | nucleus | 63.85 | 62.88 |
| EES07835 | Sorghum | nucleus | 61.15 | 61.87 |
| Zm00001d005102_P001 | Maize | mitochondrion | 60.77 | 61.24 |
| Os11t0102600-01 | Rice | plasma membrane | 60.77 | 61.0 |
| Os12t0102200-01 | Rice | nucleus | 60.77 | 61.0 |
| GSMUA_Achr11P... | Banana | nucleus | 61.15 | 59.55 |
| TraesCS5A01G156800.1 | Wheat | nucleus | 58.85 | 59.3 |
| TraesCS5B01G155000.1 | Wheat | nucleus | 58.85 | 59.3 |
| TraesCS5D01G162200.1 | Wheat | nucleus | 58.85 | 59.3 |
| GSMUA_Achr10P... | Banana | nucleus | 61.15 | 59.11 |
| HORVU5Hr1G049020.1 | Barley | plastid | 58.08 | 49.67 |
Protein Annotations
| EnsemblPlants:CDX73418 | EnsemblPlantsGene:GSBRNA2T00108904001 | Gene3D:1.20.960.40 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR006594 | InterPro:LisH | PANTHER:PTHR15431 | PFAM:PF16045 | PFscan:PS50896 | ProteinID:CDX73418 |
| ProteinID:CDX73418.1 | SEG:seg | UniParc:UPI0004EF3F83 | MapMan:13.4.1.2.1 | : | : |
Description
BnaC08g25850D
Coordinates
chrLK031799:-:225733..227732
Molecular Weight (calculated)
28774.3 Da
IEP (calculated)
5.798
GRAVY (calculated)
-0.828
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIQNS QGLPPALLGN CNDRARRLHA SPSGRLLSAL VCEYLDWAQL NHTLKVYQPE
101: CNLAKDSWKS ELPDFSSNSG YELNRNGGSK PLLLDVLDGF FKFEAIGGGG GSRRESETES SSSLDSRNPP RRSSASDSLP PQRRSVSASQ ASGPTSGYRK
201: EEHSWRYDSE DGSEEVTRAS AALENLQLDR KTRNLTSSWS RNVGDGTSEE AGKDKHGSLM
101: CNLAKDSWKS ELPDFSSNSG YELNRNGGSK PLLLDVLDGF FKFEAIGGGG GSRRESETES SSSLDSRNPP RRSSASDSLP PQRRSVSASQ ASGPTSGYRK
201: EEHSWRYDSE DGSEEVTRAS AALENLQLDR KTRNLTSSWS RNVGDGTSEE AGKDKHGSLM
001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD
Arabidopsis Description
TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.