CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	KRH11866	AT3G48750.1	17426018
AT3G55000.1	KRH36887	AT3G48750.1	17426018
AT3G55000.1	KRH42252	AT3G48750.1	17426018
AT3G55000.1	KRH58370	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93030	Soybean	nucleus	95.47	95.83
VIT_13s0067g03320.t01	Wine grape	nucleus	82.26	82.26
PGSC0003DMT400082463	Potato	nucleus	75.85	78.82
Solyc04g049710.2.1	Tomato	nucleus	78.49	78.79
Solyc04g009550.2.1	Tomato	nucleus	74.34	77.25
TraesCS5D01G162200.1	Wheat	nucleus	69.81	71.71
TraesCS5B01G155000.1	Wheat	nucleus	69.81	71.71
TraesCS5A01G156800.1	Wheat	nucleus	69.81	71.71
Os12t0102200-01	Rice	nucleus	69.81	71.43
Os11t0102600-01	Rice	plasma membrane	69.81	71.43
Zm00001d005102_P001	Maize	mitochondrion	68.3	70.16
GSMUA_Achr10P...	Banana	nucleus	70.94	69.89
GSMUA_Achr11P...	Banana	nucleus	70.19	69.66
EES15493	Sorghum	nucleus	67.17	69.53
EES07835	Sorghum	nucleus	67.17	69.26
CDX67619	Canola	nucleus	67.17	69.26
Bra003203.1-P	Field mustard	nucleus	67.17	69.26
CDY07508	Canola	nucleus	66.79	68.6
CDY51434	Canola	cytosol	9.06	68.57
AT3G55005.1	Thale cress	nucleus	66.42	68.48
AT3G55000.1	Thale cress	nucleus	67.17	68.46
CDY51435	Canola	nucleus	63.77	67.33
Bra007125.1-P	Field mustard	nucleus	62.26	65.74
CDX73418	Canola	nucleus	63.77	65.0
HORVU5Hr1G049020.1	Barley	plastid	68.68	59.87

Protein Annotations

EMBL:ACUP02006723	EnsemblPlants:KRH36276	EnsemblPlantsGene:GLYMA_10G294300	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896
ProteinID:KRH36276	ProteinID:KRH36276.1	UniParc:UPI0001BA8AFB	UniProt:I1LFH2	MapMan:13.4.1.2.1	:

Description

hypothetical protein

Coordinates

chr10:+:51159634..51162541

Molecular Weight (calculated)

29919.0 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.770

Length

265 amino acids

Sequence
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLARIRA ELRASVFEAI EEEDRVIEKE QGLPPALLGS CNDRAKQLHA SPPGRLLTAM ICEYLDWAQL SHTLKVYLPE
101: CNLEKDFWKT ELKEFSTKNG YDLNRNRDSP LLLDVLEGFL KLENLSQARA SGRRFATSET EPLPNSESQN PRRHSSSSVA GGLPPLGRAV PSSQASDRRG
201: GSSMPAYRKD EYNWRYDSDE LPEDIIQASS ALENLQLDRK ARNLTSSWRH AGDGINEDDG RADHV

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.