Factsheet for VIT_13s0067g03320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	VIT_15s0045g00310.t01	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93030	Soybean	nucleus	82.64	82.95
Solyc04g049710.2.1	Tomato	nucleus	82.26	82.58
KRH36276	Soybean	nucleus	82.26	82.26
PGSC0003DMT400082463	Potato	nucleus	78.87	81.96
Solyc04g009550.2.1	Tomato	nucleus	77.74	80.78
GSMUA_Achr11P...	Banana	nucleus	72.45	71.91
CDY51434	Canola	cytosol	9.43	71.43
GSMUA_Achr10P...	Banana	nucleus	72.45	71.38
TraesCS5D01G162200.1	Wheat	nucleus	69.43	71.32
TraesCS5B01G155000.1	Wheat	nucleus	69.43	71.32
TraesCS5A01G156800.1	Wheat	nucleus	69.43	71.32
Os12t0102200-01	Rice	nucleus	69.43	71.04
Os11t0102600-01	Rice	plasma membrane	69.43	71.04
AT3G55005.1	Thale cress	nucleus	68.3	70.43
AT3G55000.1	Thale cress	nucleus	69.06	70.38
EES15493	Sorghum	nucleus	67.55	69.92
CDY07508	Canola	nucleus	67.92	69.77
Zm00001d005102_P001	Maize	mitochondrion	67.92	69.77
EES07835	Sorghum	nucleus	67.55	69.65
CDX67619	Canola	nucleus	67.55	69.65
Bra003203.1-P	Field mustard	nucleus	67.55	69.65
CDY51435	Canola	nucleus	65.28	68.92
Bra007125.1-P	Field mustard	nucleus	63.77	67.33
CDX73418	Canola	nucleus	66.04	67.31
HORVU5Hr1G049020.1	Barley	plastid	68.68	59.87

Protein Annotations

Gene3D:1.20.960.40	EntrezGene:100265617	wikigene:100265617	MapMan:13.4.1.2.1	ProteinID:CBI25332	ProteinID:CBI25332.3
UniProt:D7T4A0	EMBL:FN595514	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR006594
EntrezGene:LOC100265617	wikigene:LOC100265617	InterPro:LisH	PFAM:PF16045	PFscan:PS50896	PANTHER:PTHR15431
TIGR:TC52108	UniParc:UPI00015CAD8B	ArrayExpress:VIT_13s0067g03320	EnsemblPlantsGene:VIT_13s0067g03320	EnsemblPlants:VIT_13s0067g03320.t01	RefSeq:XP_002281259
RefSeq:XP_002281259.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1826405..1836130

Molecular Weight (calculated)

29772.9 Da

IEP (calculated)

5.294

GRAVY (calculated)

-0.748

Length

265 amino acids

Sequence
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRAVEKE ESLPPALLGS CNDRAKQLHA SPSGRLLAAL ICEYLDWAQL NHTSKVYIPE
101: CNLQKDFWKA ELKEFSSKNG YDLNRNGESC PLLLDVLEGF LKFENLSQAR GPGRRLPTSE PDSLSGLEPR NMRRPSSSSV AGGLPPLGRP VPVSQASDRR
201: AGSSMSGYRK EDYNWRYDSD EPEDVIRTST ALENLQLDRK ARNLTTSWRH AGDGISEDDG RADHM

Best Arabidopsis Sequence Match ( AT3G55000.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD

Arabidopsis Description

TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.