Factsheet for PGSC0003DMT400082463

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	PGSC0003DMT400077428	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009550.2.1	Tomato	nucleus	98.04	98.04
VIT_13s0067g03320.t01	Wine grape	nucleus	81.96	78.87
KRH36276	Soybean	nucleus	78.82	75.85
KRG93030	Soybean	nucleus	78.43	75.76
CDY51434	Canola	cytosol	10.2	74.29
CDY07508	Canola	nucleus	70.59	69.77
Bra003203.1-P	Field mustard	nucleus	70.2	69.65
CDX67619	Canola	nucleus	70.2	69.65
AT3G55000.1	Thale cress	nucleus	70.98	69.62
GSMUA_Achr10P...	Banana	nucleus	73.33	69.52
AT3G55005.1	Thale cress	nucleus	69.02	68.48
Os12t0102200-01	Rice	nucleus	69.02	67.95
Os11t0102600-01	Rice	plasma membrane	69.02	67.95
GSMUA_Achr11P...	Banana	nucleus	70.98	67.79
TraesCS5A01G156800.1	Wheat	nucleus	68.24	67.44
TraesCS5B01G155000.1	Wheat	nucleus	68.24	67.44
TraesCS5D01G162200.1	Wheat	nucleus	68.24	67.44
CDY51435	Canola	nucleus	65.88	66.93
Zm00001d005102_P001	Maize	mitochondrion	66.67	65.89
Bra007125.1-P	Field mustard	nucleus	64.71	65.74
EES15493	Sorghum	nucleus	65.88	65.62
EES07835	Sorghum	nucleus	65.88	65.37
CDX73418	Canola	nucleus	65.88	64.62
HORVU5Hr1G049020.1	Barley	plastid	67.45	56.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400082463	EnsemblPlantsGene:PGSC0003DMG400032551	EntrezGene:102606356	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	ncoils:Coil	PANTHER:PTHR15431	PFAM:PF16045
PFscan:PS50896	PGSC:PGSC0003DMG400032551	RefSeq:XP_006359340.1	SEG:seg	UniParc:UPI000294C7D8	UniProt:M1D600
MapMan:13.4.1.2.1	:	:	:	:	:

Description

FGFR1 oncogene partner [Source:PGSC_GENE;Acc:PGSC0003DMG400032551]

Coordinates

chr4:+:5189114..5193713

Molecular Weight (calculated)

28558.4 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.738

Length

255 amino acids

Sequence
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EDEDRVIEKD ETLPPALLGS CNDQAKQLHN SPSGRLLTAL ICEYLDWAQL NHTLKVYLPE
101: CNLPKESWKS ELKEFSSKNG YDLNRNGDSA PLLLDVLEGF LKYENFSQAK GAGSLSNTEA RNVRKPSSSS VAGGLPPLGR PGPAAQSSDR RAGSSISGYR
201: KDEYNWRYEN EELSQDVMLA SSALENLQLD RKARNLTTSW RHRGDGISED DGRME

Best Arabidopsis Sequence Match ( AT3G55000.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD

Arabidopsis Description

TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.