Factsheet for GSMUA_Achr10P05870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	GSMUA_Achr11P...	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	83.64	84.27
PGSC0003DMT400082463	Potato	nucleus	69.52	73.33
VIT_13s0067g03320.t01	Wine grape	nucleus	71.38	72.45
Solyc04g009550.2.1	Tomato	nucleus	68.4	72.16
Solyc04g049710.2.1	Tomato	nucleus	70.26	71.59
Os12t0102200-01	Rice	nucleus	68.77	71.43
Os11t0102600-01	Rice	plasma membrane	68.77	71.43
TraesCS5D01G162200.1	Wheat	nucleus	68.4	71.32
TraesCS5B01G155000.1	Wheat	nucleus	68.4	71.32
KRH36276	Soybean	nucleus	69.89	70.94
TraesCS5A01G156800.1	Wheat	nucleus	68.03	70.93
KRG93030	Soybean	nucleus	69.14	70.45
EES15493	Sorghum	nucleus	65.8	69.14
EES07835	Sorghum	nucleus	65.8	68.87
Zm00001d005102_P001	Maize	mitochondrion	65.8	68.6
CDY51434	Canola	cytosol	8.92	68.57
CDX67619	Canola	nucleus	62.83	65.76
Bra003203.1-P	Field mustard	nucleus	62.83	65.76
CDY07508	Canola	nucleus	62.83	65.5
AT3G55005.1	Thale cress	nucleus	62.08	64.98
AT3G55000.1	Thale cress	nucleus	62.45	64.62
CDY51435	Canola	nucleus	58.36	62.55
Bra007125.1-P	Field mustard	nucleus	57.62	61.75
CDX73418	Canola	nucleus	59.11	61.15
HORVU5Hr1G049020.1	Barley	plastid	66.91	59.21

Protein Annotations

EnsemblPlants:GSMUA_Achr10P05870_001	EnsemblPlants:GSMUA_Achr10T05870_001	EnsemblPlantsGene:GSMUA_Achr10G05870_001	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896
SEG:seg	UniParc:UPI000294D1DA	UniProt:M0RFR4	MapMan:13.4.1.2.1	:	:

Description

tonneau 1b, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G05870_001]

Coordinates

chr10:-:16355370..16361967

Molecular Weight (calculated)

30321.4 Da

IEP (calculated)

4.896

GRAVY (calculated)

-0.752

Length

269 amino acids

Sequence
(BLAST)

001: MDDYAREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDQVLEND DNVPPALLGS CNDRAKQLHT SPSGRLLTAL ICEYLDWAQL GHTLKVYLPE
101: CNLQKDFWKE ELKDFSNKNQ YDSNKNGDSG PLLLEVLEGY LKYENLTQNR MAGGSLINSE TESISSGEAR NVRRPFSSSS SSAAHGGLPS LDRPVPLTQS
201: SDRKSSSSVP TNRKDDYMWR YDAEISEDVM RAANALENIQ LDRKARNLTT SWRHANNGIM EDDGTVDRR

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.