Factsheet for GSMUA_Achr11P19650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	GSMUA_Achr11P...	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	84.27	83.64
VIT_13s0067g03320.t01	Wine grape	nucleus	71.91	72.45
Solyc04g049710.2.1	Tomato	nucleus	70.41	71.21
PGSC0003DMT400082463	Potato	nucleus	67.79	70.98
TraesCS5B01G155000.1	Wheat	nucleus	68.16	70.54
TraesCS5A01G156800.1	Wheat	nucleus	68.16	70.54
TraesCS5D01G162200.1	Wheat	nucleus	68.16	70.54
KRH36276	Soybean	nucleus	69.66	70.19
Os11t0102600-01	Rice	plasma membrane	67.79	69.88
Os12t0102200-01	Rice	nucleus	67.79	69.88
Solyc04g009550.2.1	Tomato	nucleus	66.67	69.8
KRG93030	Soybean	nucleus	68.91	69.7
EES15493	Sorghum	nucleus	65.17	67.97
Zm00001d005102_P001	Maize	mitochondrion	65.17	67.44
EES07835	Sorghum	nucleus	64.79	67.32
CDY51434	Canola	cytosol	8.61	65.71
AT3G55000.1	Thale cress	nucleus	62.17	63.85
CDX67619	Canola	nucleus	61.42	63.81
Bra003203.1-P	Field mustard	nucleus	61.42	63.81
CDY51435	Canola	nucleus	59.93	63.74
CDY07508	Canola	nucleus	61.42	63.57
AT3G55005.1	Thale cress	nucleus	60.67	63.03
Bra007125.1-P	Field mustard	nucleus	59.18	62.95
CDX73418	Canola	nucleus	59.55	61.15
HORVU5Hr1G049020.1	Barley	plastid	67.04	58.88

Protein Annotations

EnsemblPlants:GSMUA_Achr11P19650_001	EnsemblPlants:GSMUA_Achr11T19650_001	EnsemblPlantsGene:GSMUA_Achr11G19650_001	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896
SEG:seg	UniParc:UPI000294E559	UniProt:M0RTP5	MapMan:13.4.1.2.1	:	:

Description

tonneau 1b, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G19650_001]

Coordinates

chr11:-:20721829..20730042

Molecular Weight (calculated)

30042.2 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.676

Length

267 amino acids

Sequence
(BLAST)

001: MDDYAREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRAIQND DNVPPALLGS CNDRAKQLHT SPSGRLLTAL IGEYLEWAQL GHTLKVYLPE
101: CNLPKDFWRD ELKDFSSTNR YDSNRNGECG PLLLDVLEGY LKYENLTQNR VAGGRLIDSD TISVSSVEAR NVRRPSSSSA APGGLPSLGR PVPRIQTSER
201: KSSSSVPMNR KDDYMWKYDV DEVSEDVIRA ANALENIQLD RKARNLTSSW RHASDGTMED DGMVDHH

Best Arabidopsis Sequence Match ( AT3G55000.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD

Arabidopsis Description

TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.